GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE239481
Query DataSets for GSE239481
Status
Public on Apr 17, 2024
Title
Defining Cis-regulatory Elements and Transcription Factors that Control Human Cortical Interneuron Development
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation missing
Has this study been published? Please
login
to update or
notify GEO
.
Submission date
Jul 27, 2023
Last update date
Apr 18, 2024
Contact name
Kristen Kroll
Organization name
Washington University School of Medicine
Department
Developmental Biology
Lab
Kristen Kroll
Street address
320 McDonnell Sciences/660 S. Euclid Ave.
City
Saint Louis
State/province
MO
ZIP/Postal code
63110
Country
USA
Platforms (2)
GPL16791
Illumina HiSeq 2500 (Homo sapiens)
GPL24676
Illumina NovaSeq 6000 (Homo sapiens)
Samples (118)
Less...
More...
GSM7664083
H9 WT D0 RNAseq Replicate 1
GSM7664084
H9 WT D0 RNAseq Replicate 2
GSM7664085
H9 WT D0 RNAseq Replicate 3
GSM7664086
H9 WT D0 RNAseq Replicate 4
GSM7664087
H9 WT D15 RNAseq Replicate 1
GSM7664088
H9 WT D15 RNAseq Replicate 2
GSM7664089
H9 WT D15 RNAseq Replicate 3
GSM7664090
H9 WT D15 RNAseq Replicate 4
GSM7664091
H9 WT D35 RNAseq Replicate 1
GSM7664092
H9 WT D35 RNAseq Replicate 2
GSM7664093
H9 WT D35 RNAseq Replicate 3
GSM7664094
H9 WT D35 RNAseq Replicate 4
GSM7664095
H9 WT D60 RNAseq Replicate 1
GSM7664096
H9 WT D60 RNAseq Replicate 2
GSM7664097
H9 WT D60 RNAseq Replicate 3
GSM7664155
H9 WT D0 H3K27ac Replicate 1
GSM7664156
H9 WT D0 H3K27ac Replicate 2
GSM7664157
H9 WT D0 H3K27ac Replicate 3
GSM7664158
H9 WT D0 H3K27ac Replicate 4
GSM7664159
H9 WT D0 H3K27ac Replicate 5
GSM7664160
H9 WT D0 H3K27me3 Replicate 1
GSM7664161
H9 WT D0 H3K27me3 Replicate 2
GSM7664162
H9 WT D0 H3K27me3 Replicate 3
GSM7664163
H9 WT D0 H3K27me3 Replicate 4
GSM7664164
H9 WT D0 H3K27me3 Replicate 5
GSM7664165
H9 WT D0 H3K4me3 Replicate 1
GSM7664166
H9 WT D0 H3K4me3 Replicate 2
GSM7664167
H9 WT D0 H3K4me3 Replicate 3
GSM7664168
H9 WT D0 H3K4me3 Replicate 4
GSM7664169
H9 WT D0 H3K4me3 Replicate 5
GSM7664170
H9 WT D0 H3K4me3 Replicate 6
GSM7664171
H9 WT D0 H3K9me3 Replicate 1
GSM7664172
H9 WT D0 H3K9me3 Replicate 2
GSM7664173
H9 WT D0 H3K9me3 Replicate 3
GSM7664174
H9 WT D0 IgG Replicate 1
GSM7664175
H9 WT D0 IgG Replicate 2
GSM7664176
H9 WT D0 IgG Replicate 3
GSM7664177
WT D15-V H3K27ac Replicate 1
GSM7664178
WT D15-V H3K27ac Replicate 2
GSM7664179
WT D15-V H3K27ac Replicate 3
GSM7664180
WT D15-V H3K27me3 Replicate 1
GSM7664181
WT D15-V H3K27me3 Replicate 2
GSM7664182
WT D15-V H3K27me3 Replicate 3
GSM7664183
WT D15-V H3K4me3 Replicate 1
GSM7664184
WT D15-V H3K4me3 Replicate 2
GSM7664185
WT D15-V H3K4me3 Replicate 3
GSM7664186
WT D15-V H3K4me3 Replicate 4
GSM7664187
WT D15-V H3K9me3 Replicate 1
GSM7664188
WT D15-V H3K9me3 Replicate 2
GSM7664189
WT D15-V H3K9me3 Replicate 3
GSM7664190
WT D15-V IgG Replicate 1
GSM7664191
WT D15-V IgG Replicate 2
GSM7664192
WT D15-V IgG Replicate 3
GSM7664193
WT D15-D H3K27ac Replicate 1
GSM7664194
WT D15-D H3K27ac Replicate 2
GSM7664195
WT D15-D H3K27ac Replicate 3
GSM7664196
WT D15-D H3K27ac Replicate 4
GSM7664197
WT D15-D H3K27me3 Replicate 1
GSM7664198
WT D15-D H3K27me3 Replicate 2
GSM7664199
WT D15-D H3K27me3 Replicate 3
GSM7664200
WT D15-D H3K27me3 Replicate 4
GSM7664201
WT D15-D H3K4me3 Replicate 1
GSM7664202
WT D15-D H3K4me3 Replicate 2
GSM7664203
WT D15-D H3K4me3 Replicate 3
GSM7664204
WT D15-D H3K4me3 Replicate 4
GSM7664205
WT D15-D H3K9me3 Replicate 1
GSM7664206
WT D15-D H3K9me3 Replicate 2
GSM7664207
WT D15-D H3K9me3 Replicate 3
GSM7664208
WT D15-D H3K9me3 Replicate 4
GSM7664209
WT D15-D IgG Replicate 1
GSM7664210
WT D15-D IgG Replicate 2
GSM7664211
WT D15-D IgG Replicate 3
GSM7664212
WT D15-D IgG Replicate 4
GSM7664213
WT D35 H3K27ac Replicate 1
GSM7664214
WT D35 H3K27ac Replicate 2
GSM7664215
WT D35 H3K27ac Replicate 3
GSM7664216
WT D35 H3K27ac Replicate 4
GSM7664217
WT D35 H3K27me3 Replicate 1
GSM7664218
WT D35 H3K27me3 Replicate 2
GSM7664219
WT D35 H3K27me3 Replicate 3
GSM7664220
WT D35 H3K4me3 Replicate 1
GSM7664221
WT D35 H3K4me3 Replicate 2
GSM7664222
WT D35 H3K4me3 Replicate 3
GSM7664223
WT D35 H3K4me3 Replicate 4
GSM7664224
WT D35 H3K9me3 Replicate 1
GSM7664225
WT D35 H3K9me3 Replicate 2
GSM7664226
WT D35 H3K9me3 Replicate 3
GSM7664227
WT D35 H3K9me3 Replicate 4
GSM7664228
WT D35 IgG Replicate 1
GSM7664229
WT D35 IgG Replicate 2
GSM7664230
WT D35 IgG Replicate 3
GSM7664231
WT D60 H3K27ac Replicate 1
GSM7664232
WT D60 H3K27ac Replicate 2
GSM7664233
WT D60 H3K27ac Replicate 3
GSM7664234
WT D60 H3K27me3 Replicate 1
GSM7664235
WT D60 H3K27me3 Replicate 2
GSM7664236
WT D60 H3K27me3 Replicate 3
GSM7664237
WT D60 H3K4me3 Replicate 1
GSM7664238
WT D60 H3K4me3 Replicate 2
GSM7664239
WT D60 H3K4me3 Replicate 3
GSM7664240
WT D60 H3K9me3 Replicate 1
GSM7664241
WT D60 H3K9me3 Replicate 2
GSM7664242
WT D60 H3K9me3 Replicate 3
GSM7664243
WT D60 IgG Replicate 1
GSM7664244
WT D60 IgG Replicate 2
GSM7664245
WT D60 IgG Replicate 3
GSM7664351
KRAB D15 RNA Replicate1
GSM7664352
KRAB D15 RNA Replicate2
GSM7664353
KRAB D15 RNA Replicate3
GSM7664354
KRAB D15 RNA Replicate4
GSM7664355
RFX3-G1 D15 RNA Replicate1
GSM7664356
RFX3-G1 D15 RNA Replicate2
GSM7664357
RFX3-G1 D15 RNA Replicate3
GSM7664358
RFX3-G1 D15 RNA Replicate4
GSM7664359
RFX4-G1 D15 RNA Replicate 1
GSM7664360
RFX4-G1 D15 RNA Replicate 2
GSM7664361
RFX4-G1 D15 RNA Replicate 3
GSM7664362
RFX4-G1 D15 RNA Replicate 4
This SuperSeries is composed of the following SubSeries:
GSE239396
Assessment of gene expression changes during human cortical interneuron development
GSE239400
Assessment of chromatin state changes during human cortical interneuron development
GSE239413
Effect of RFX3 or RFX4 knockdown on ventral telencephalic medial ganglionic eminence-like (MGE-like) neuronal precursors
Relations
BioProject
PRJNA999364
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE239481_RAW.tar
8.4 Gb
(http)
(custom)
TAR (of BIGWIG, BROADPEAK, NARROWPEAK)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|