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Series GSE44909 Query DataSets for GSE44909
Status Public on Sep 27, 2013
Title Epigenome analysis of HCC samples with paired adjacent tissue
Organism Homo sapiens
Experiment type Methylation profiling by array
Summary Genome wide DNA methylation profiling of paired adjacent and hepatocellular samples and 8 non-diseased liver samples. The Illumina Infinium 27k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,000 CpGs. Samples included 12 paired adjacent and 12 hepatocellular samples.
 
Overall design Bisulphite converted DNA from the 24 samples were hybridised to the Illumina Infinium 27k Human Methylation Beadchip v1.2
 
Contributor(s) Revill K, Wang T, Li J, Powers S, Finn RS, Chen X, Kojima K, Hoshida Y, Llovet JM
Citation(s) 24012984
Submission date Mar 05, 2013
Last update date Jan 02, 2015
Contact name Jinyu Li
E-mail(s) jinyu.li.1@stonybrook.edu
Organization name Stony Brook University
Department Cancer Center
Street address 101 Nicolls Rd
City Stony Brook
State/province NY
ZIP/Postal code 11794
Country USA
 
Platforms (1)
GPL8490 Illumina HumanMethylation27 BeadChip (HumanMethylation27_270596_v.1.2)
Samples (32)
GSM1093829 genomic DNA HCC tissue [0846-01A_T2]
GSM1093830 genomic DNA adjacent tissue [0846-01B_N2]
GSM1093831 genomic DNA HCC tissue [0846-01C_T3]
Relations
BioProject PRJNA192918

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE44909_Matrix_signal_intensities.txt.gz 4.7 Mb (ftp)(http) TXT
GSE44909_RAW.tar 5.8 Mb (http)(custom) TAR
Processed data included within Sample table
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