|
| Status |
Public on Sep 27, 2013 |
| Title |
genomic DNA HCC tissue [0884-01D_T13] |
| Sample type |
genomic |
| |
|
| Source name |
genomic DNA HCC tissue
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
disease state: HCC
tissue source: CHTN
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from samples using Qiagen DNeasy Blood and Tissue Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
diseased liver
|
| Data processing |
BeadStudio software v3.2
matrix signal intensities value definition: Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Mar 05, 2013 |
| Last update date |
Sep 27, 2013 |
| Contact name |
Jinyu Li |
| E-mail(s) |
jinyu.li.1@stonybrook.edu
|
| Organization name |
Stony Brook University
|
| Department |
Cancer Center
|
| Street address |
101 Nicolls Rd
|
| City |
Stony Brook |
| State/province |
NY |
| ZIP/Postal code |
11794 |
| Country |
USA |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE44909 |
Epigenome analysis of HCC samples with paired adjacent tissue |
|
