|
| Status |
Public on Jun 12, 2015 |
| Title |
CCSK 1 |
| Sample type |
genomic |
| |
|
| Source name |
Clear cell sarcoma of the kidney
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
sample type: frozen tissues
disease state: Clear cell sarcoma of the kidney
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted and purified from fresh-frozen tissues using GE Healthcare Bio-Science illustra tissue & cells genomicprep Mini Spin Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulfite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation27 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using iScan array scanner (illumina) using standard setting.
|
| Description |
genomic DNA from Clear cell sarcoma of the kidney 1
|
| Data processing |
GenomeStudio v2010.1 was used to determine the methylation level at each CpG site as beta value.
|
| |
|
| Submission date |
Mar 04, 2013 |
| Last update date |
Jun 12, 2015 |
| Contact name |
Hitomi Ueno |
| E-mail(s) |
ueno-ht@ncchd.go.jp
|
| Organization name |
National Center for Child Health and Development
|
| Street address |
2-10-1 Okura
|
| City |
Seyagaya-ku |
| ZIP/Postal code |
157-8535 |
| Country |
Japan |
| |
|
| Platform ID |
GPL8490 |
| Series (1) |
| GSE44847 |
DNA methylation analysis of Rhabdoid tumor of the kidney, Clear cell sarcoma of the kidney and Ewing's sarcoma family of tumors |
|
