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Sample GSM1273920 Query DataSets for GSM1273920
Status Public on Nov 24, 2014
Title MG-SC (SOD1/miR155+/-)-3
Sample type RNA
 
Source name Mouse -B6/SJL-mSOD1G93A-miR-155+/-
Organism Mus musculus
Characteristics cell type: Spinal FACS sorted adult FCRLS+ microglia
strain/genotype: B6SJL-Tg(SOD1-G93A)1Gur/J / miR-155+/-
gender: female
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol nCounter Mouse Inflammation Kit
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Nov 22, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL17981
Series (2)
GSE52673 Inflammation gene profile of sc-microglia in SOD mice
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
Cltc 256
Atf2 32
Tradd 28
Mapk1 45
Mef2b 13
Ppp1r12b 17
Rapgef2 32
Csf1 164
Il1r1 17
C1qa 1852
Cfl1 43
Ccr7 9
Crp 4
Daxx 13
Ddit3 34
Elk1 11
Ptk2 6
Gapdh 220
Gnaq 26
Gnb1 90

Total number of rows: 185

Table truncated, full table size 1 Kbytes.




Supplementary file Size Download File type/resource
GSM1273920_20111217_B_B_04.RCC.gz 2.2 Kb (ftp)(http) RCC
Processed data included within Sample table

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