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Sample GSM1278625 Query DataSets for GSM1278625
Status Public on Nov 24, 2014
Title sALS 701-002
Sample type RNA
 
Source name Whole spinal cord homogenate - post mortem obtained from ALS donor
Organism Homo sapiens
Characteristics cell type: Whole spinal cord homogenate - post mortem
phenotype: ALS
Treatment protocol NA
Growth protocol NA
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using mirVanaTM miRNA isolation kit (Ambion) according to the manufacturer’s protocol
Label NA
Label protocol MG447 microglial custom Nanostring codesets
 
Hybridization protocol according to the manufacturer’s protocol
Scan protocol according to the manufacturer’s protocol
Data processing Data was proccessed using nSolver, normalized to Positive controls, Housekeeping genes and negative controls
 
Submission date Dec 04, 2013
Last update date Nov 24, 2014
Contact name Oleg Butovsky
E-mail(s) obutovsky@rics.bwh.harvard.edu
Phone 1-617-525-5313
Organization name Brigham and Women's Hospital, Harvard Medical School
Department Center of Neurologic Diseases
Lab Dr. Oleg Butovsky
Street address 77 Avenue Louis Pasteur, Office 614
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platform ID GPL18023
Series (2)
GSE52947 Targeting miR-155 restores abnormal microglia and attenuates disease in SOD1 mice
GSE52959 MG447 profile of lumbar spinal cord homogenate from healthy controls and ALS

Data table header descriptions
ID_REF
VALUE Normalized mRNA transcripts copies per 100ng of total RNA

Data table
ID_REF VALUE
1810011O10Rik 70
Abca1 257
Abcc3 122
Abhd12 690
Abhd6 132
Abi1 609
Abi3 144
Acp2 35
Acvr1 216
Adamts1 490
Adamts16 9
Adap2 126
Adcyap1r1 1260
Adora3 163
Adrb1 26
AGMO 29
Agpat3 337
Ahcyl1 5165
Aif1 41
Ak1 523

Total number of rows: 447

Table truncated, full table size 4 Kbytes.




Supplementary file Size Download File type/resource
GSM1278625_ALS-701-002_MG447v1hulumbar.RCC.gz 5.0 Kb (ftp)(http) RCC
Processed data included within Sample table

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