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Sample GSM1675102 Query DataSets for GSM1675102
Status Public on May 06, 2015
Title becic-00235: PN48: HG_U95B
Sample type RNA
 
Source name P48_prostate_cancer
Organism Homo sapiens
Characteristics Sex: male
age: --
diseasestate: Prostate_Adenocarcinoma
tumorgrading: Gleason_Score_8
diseasestaging: pT T3b, pN N0, pM MX
organismpart: Prostate
histology: ALI unknown, ECI focal, SVI yes, SMI no
prostatetissue: adjacent normal
Biomaterial provider University of Pittsburgh, Department of Pathology
Extracted molecule total RNA
Extraction protocol See mage-tab files linked to series entry for additional details
Label biotin
Label protocol See mage-tab files linked to series entry for additional details
 
Hybridization protocol See mage-tab files linked to series entry for additional details
Scan protocol See mage-tab files linked to series entry for additional details
Data processing See mage-tab files linked to series entry for additional details
 
Submission date May 05, 2015
Last update date May 06, 2015
Contact name Mervi Heiskanen
E-mail(s) mervi.heiskanen@nih.gov
Phone 2402765175
Organization name NCI
Department CBIIT
Street address 9609 Medical Center Drive, 1W378
City Rockville
State/province MD
ZIP/Postal code 20850
Country USA
 
Platform ID GPL92
Series (1)
GSE68555 caArray_becic-00235: Gene expression alterations in prostate cancer predicting tumor aggression and preceding development of malignancy

Data table header descriptions
ID_REF
VALUE Signal
ABS_CALL indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-MurIL2_at 85.0558 A 0.631562
AFFX-MurIL10_at 26.564 A 0.824672
AFFX-MurIL4_at 97.252 M 0.0464673
AFFX-MurFAS_at 149.007 A 0.354453
AFFX-BioB-5_at 743.725 P 0.002867
AFFX-BioB-M_at 1642.47 P 0.000389797
AFFX-BioB-3_at 851.389 P 0.00110197
AFFX-BioC-5_at 2234.6 P 7.00668e-05
AFFX-BioC-3_at 2001.83 P 7.00668e-05
AFFX-BioDn-5_at 2045.4 P 6.02111e-05
AFFX-BioDn-3_at 14250.9 P 7.00668e-05
AFFX-CreX-5_at 26231.4 P 4.42873e-05
AFFX-CreX-3_at 42079.5 P 4.42873e-05
AFFX-BioB-5_st 49.1221 A 0.5
AFFX-BioB-M_st 163.496 A 0.48511
AFFX-BioB-3_st 30.6344 A 0.883887
AFFX-BioC-5_st 52.2017 A 0.891021
AFFX-BioC-3_st 87.0989 A 0.52976
AFFX-BioDn-5_st 327.858 A 0.156732
AFFX-BioDn-3_st 304.941 M 0.0542134

Total number of rows: 12620

Table truncated, full table size 352 Kbytes.




Supplementary file Size Download File type/resource
GSM1675102_PN48_u95b2scan.CEL.gz 2.4 Mb (ftp)(http) CEL
GSM1675102_PN48_u95b2scanmas5.CHP.gz 4.3 Mb (ftp)(http) CHP
GSM1675102_PN48_u95b2scanmas5.CHP.txt.gz 129.6 Kb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file

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