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Status
Public on Dec 11, 2007
Title
Day 42 smoke exposure 3
Sample type
RNA
Source name
rat lung, day42, smoke
Organism
Rattus norvegicus
Characteristics
Strain : SD Gender : Male Tissue : Lung
Extracted molecule
total RNA
Extraction protocol
Trizol extraction of total RNA was performed according to the manufacturers instructions.
Label
biotin
Label protocol
Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 10 ug total RNA (Expression Analysis Technical Manual, 2001, Affymetrix)
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Description
rat lung, day42, smoke
Data processing
The data was analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling of as normalization method. The trimmed mean target intensity of each array was set to 150.
Submission date
Feb 20, 2007
Last update date
Dec 11, 2007
Contact name
Christopher S Stevenson
Organization name
Novartis Institutes for BioMedical Research
Department
Respiratory Diseases
Street address
Wimblehurst Road
City
Horsham
ZIP/Postal code
RH12 5AB
Country
United Kingdom
Platform ID
GPL85
Series (1)
GSE7079
Chronic rat exposure to cigarette smoke
Data table header descriptions
ID_REF
VALUE
MAS5-calculated Signal intensity
ABS_CALL
the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE
p-value that indicates the significance level of the detection call
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-3_at
117.200000
P
0.000169
AFFX-BioB-3_st
4.900000
A
0.814869
AFFX-BioB-5_at
91.100000
P
0.009337
AFFX-BioB-5_st
19.400000
A
0.147939
AFFX-BioB-M_at
205.700000
P
0.000390
AFFX-BioB-M_st
24.000000
A
0.250796
AFFX-BioC-3_at
206.800000
P
0.000070
AFFX-BioC-3_st
1.100000
A
0.883887
AFFX-BioC-5_at
289.100000
P
0.000147
AFFX-BioC-5_st
4.500000
A
0.932322
AFFX-BioDn-3_at
1468.100000
P
0.000081
AFFX-BioDn-3_st
28.200000
A
0.131361
AFFX-BioDn-5_at
252.900000
P
0.000110
AFFX-BioDn-5_st
39.600000
A
0.165861
AFFX-CreX-3_at
4132.400000
P
0.000044
AFFX-CreX-3_st
22.400000
A
0.185131
AFFX-CreX-5_at
2370.800000
P
0.000044
AFFX-CreX-5_st
18.300000
A
0.116113
AFFX-DapX-3_at
1.100000
A
0.986189
AFFX-DapX-5_at
8.000000
A
0.147939
Total number of rows: 8799 Table truncated, full table size 296 Kbytes .Supplementary file
Size
Download
File type/resource
GSM170383.cel.gz
1.9 Mb
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CEL
Processed data included within Sample table