|
| Status |
Public on Dec 15, 2021 |
| Title |
[EPIC] genomic DNA from muscle sample 47 |
| Sample type |
genomic |
| |
|
| Source name |
muscle sample 47
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
cohort: HSS
sample type: Muscle tissue
age (yr): 72.3
dna extraction method: QIAamp
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from the HSS muscle tissue using QIAamp DNA mini kit (Qiagen) and from the HSSe muscle tissue using the high salt method.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
muscle sample
|
| Data processing |
R v3.4.2
|
| |
|
| Submission date |
Jul 23, 2020 |
| Last update date |
Dec 15, 2021 |
| Contact name |
Elie Antoun |
| Organization name |
University of Oxford
|
| Department |
CAMS China Oxford Institute (CAMS-COI
|
| Street address |
Nuffield Department of Medicine
|
| City |
Oxford |
| State/province |
United Kingdom |
| ZIP/Postal code |
OX3 7BN |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL21145 |
| Series (1) |
| GSE154980 |
Epigenome analysis of muscle tissue samples from male participants of the Hertfordshire Sarcopenia Study (HSS) and Hertfordshire Sarcopenia Study extension (HSSe) |
|
