|
| Status |
Public on Aug 11, 2021 |
| Title |
genomic DNA from ovarian cancer tissues [G589] |
| Sample type |
genomic |
| |
|
| Source name |
Tumor Tissues
|
| Organism |
Homo sapiens |
| Characteristics |
Sex: female
Stage: 2C
grade: 3
age: 52
tumour subtypes: O1S
tumour subtypes2: serous
primary chemotherapy treatment: carboplatin/pacelitaxel
recurrence: 1
doot: 18-Nov-08
dodx: 18-Nov-08
survivial status: 4
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified from LBC samples using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human MethylationEPIC Beadchip kit using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina iScan System
|
| Description |
Ovarian tumor tissue
R03C01
|
| Data processing |
Genome Studio Version 2011.1 and Methylation Fenome Studio Module v1.9
|
| |
|
| Submission date |
Mar 15, 2021 |
| Last update date |
Aug 11, 2021 |
| Contact name |
David Wai Chan |
| E-mail(s) |
dwchan@hku.hk
|
| Phone |
852-39179367
|
| Organization name |
The Uniersity of Hong Kong
|
| Department |
Obs. & Gyn.
|
| Lab |
Oncology
|
| Street address |
L747 Laboratory Block, LKS Faculty of Medicine, 21 Sassoon Road
|
| City |
Pokfulam |
| State/province |
Hong Kong |
| ZIP/Postal code |
852 |
| Country |
Hong Kong |
| |
|
| Platform ID |
GPL21145 |
| Series (2) |
| GSE168926 |
Genome-wide DNA methylome analysis identifies putative biomarkers associated with the survival of human ovarian cancers [80 cases] |
| GSE168930 |
Genome-wide DNA methylome analysis identifies putative biomarkers associated with the survival of human ovarian cancers |
|
