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Sample GSM946795 Query DataSets for GSM946795
Status Public on Jun 14, 2012
Title Diazinon 1
Sample type genomic
 
Source name K562 cell line
Organism Homo sapiens
Characteristics treatment: Diazinon
cell line: K562
concentration: 0.1uM
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label C-Bio and A-DNP
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description genomic DNA from K562 cells treated with diazinon
Data processing Bioconductor lumi package, version 2.0
 
Submission date Jun 11, 2012
Last update date Jun 14, 2012
Contact name xiao zhang
Organization name Northwestern University
Street address 680 N. Lake Shore Drive
City Chicago
ZIP/Postal code 60605
Country USA
 
Platform ID GPL8490
Series (1)
GSE38646 DNA methylation alterations in response to pesticide exposure in vitro

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the intensities measured by methylated probes
UNMETHYLATED the intensities measured by unmethylated probes
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000292 0.76149 0.75735 6208 1889 3.678e-38
cg00002426 0.1465 0.16434 718 3551 5.3239e-28
cg00003994 0.098676 0.11315 677 5206 3.678e-38
cg00005847 0.26468 0.27081 807 2073 3.6507e-10
cg00006414 0.07849 0.085539 362 3770 8.2346e-26
cg00007981 0.14152 0.14794 1818 10371 3.678e-38
cg00008493 0.96664 0.96527 17873 543 3.678e-38
cg00008713 0.044397 0.045718 1106 22986 3.678e-38
cg00009407 0.041382 0.044556 451 9571 3.678e-38
cg00010193 0.14412 0.1449 4774 28073 3.678e-38
cg00011459 0.7166 0.70512 1583 562 0.00013276
cg00012199 0.039629 0.043781 340 7326 3.678e-38
cg00012386 0.056411 0.059466 1836 28939 3.678e-38
cg00012792 0.049024 0.051249 2204 40702 3.678e-38
cg00013618 0.53534 0.53543 9037 7741 3.678e-38
cg00014085 0.038754 0.041974 421 9509 3.678e-38
cg00014837 0.50647 0.51266 1033 882 0.0021153
cg00015770 0.056298 0.057913 1119 18103 3.678e-38
cg00016968 0.47387 0.47411 10319 11346 3.678e-38
cg00019495 0.13357 0.15297 633 3405 2.308e-24

Total number of rows: 27578

Table truncated, full table size 1280 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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