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    rsph14 radial spoke head 14 homolog [ Danio rerio (zebrafish) ]

    Gene ID: 553388, updated on 27-Mar-2024

    Summary

    Official Symbol
    rsph14provided by ZNC
    Official Full Name
    radial spoke head 14 homologprovided by ZNC
    Primary source
    ZFIN:ZDB-GENE-081104-375
    See related
    Ensembl:ENSDARG00000017983 AllianceGenome:ZFIN:ZDB-GENE-081104-375
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Danio rerio
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
    Also known as
    rtdr1; si:dkey-220o5.4
    Summary
    Orthologous to human RSPH14 (radial spoke head 14 homolog). [provided by Alliance of Genome Resources, Apr 2022]
    Orthologs
    NEW
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    Genomic context

    See rsph14 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current GRCz11 (GCF_000002035.6) 8 NC_007119.7 (44566702..44586984, complement)
    105 previous assembly GRCz10 (GCF_000002035.5) 8 NC_007119.6 (44572624..44593078, complement)

    Chromosome 8 - NC_007119.7Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103911561 Neighboring gene si:dkey-220o5.5 Neighboring gene BCL2 associated athanogene 4 Neighboring gene LSM1, U6 small nuclear RNA associated

    Genomic regions, transcripts, and products

    Expression

    • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
    • BioProject: PRJEB1986
    • Analysis date: Fri Dec 8 19:48:10 2017

    General protein information

    Preferred Names
    radial spoke head 14 homolog
    Names
    rhabdoid tumor deletion region gene 1
    rhabdoid tumor deletion region protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001327866.1NP_001314795.1  radial spoke head 14 homolog

      Status: VALIDATED

      Source sequence(s)
      CR931937
      UniProtKB/TrEMBL
      A0A8M1P3V2, B8JJ19
      Related
      ENSDARP00000023459.8, ENSDART00000026831.10
      Conserved Domains (3) summary
      cd00020
      Location:186299
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00044
      Location:151175
      HEAT; HEAT repeat [structural motif]
      cl22454
      Location:268340
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...

    RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCz11 Primary Assembly

    Genomic

    1. NC_007119.7 Reference GRCz11 Primary Assembly

      Range
      44566702..44586984 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_009304239.3XP_009302514.1  radial spoke head 14 homolog isoform X2

      See identical proteins and their annotated locations for XP_009302514.1

      UniProtKB/TrEMBL
      A0A8M1P3V2, B8JJ19
      Conserved Domains (3) summary
      cd00020
      Location:186299
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00044
      Location:151175
      HEAT; HEAT repeat [structural motif]
      cl22454
      Location:268340
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
    2. XM_009304238.2XP_009302513.1  radial spoke head 14 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8M3AVH9
      Related
      ENSDARP00000098068.3, ENSDART00000113945.4
      Conserved Domains (3) summary
      cd00020
      Location:149212
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...
      sd00044
      Location:2852
      HEAT; HEAT repeat [structural motif]
      cl22454
      Location:27137
      ARM; Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, ...