cstf1 cleavage stimulation factor, 3' pre-RNA, subunit 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: cstf1provided by ZNC
Official Full Name: cleavage stimulation factor, 3' pre-RNA, subunit 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-030131-2958
See related: Ensembl:ENSDARG00000044820 AllianceGenome:ZFIN:ZDB-GENE-030131-2958
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fc22d10; zgc:66207; zgc:77560; wu:fc22d10; wu:fd16h09
Summary: Predicted to be part of mRNA cleavage stimulating factor complex. Orthologous to human CSTF1 (cleavage stimulation factor subunit 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 11

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	11	NC_007122.7 (27817301..27827533, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	11	NC_007122.6 (27570127..27580359, complement)

Chromosome 11 - NC_007122.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Process	Evidence Code	Pubs
acts_upstream_of_or_within mRNA 3'-end processing	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within mRNA processing	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of mRNA cleavage stimulating factor complex	IBA Inferred from Biological aspect of Ancestor more info
part_of mRNA cleavage stimulating factor complex	IEA Inferred from Electronic Annotation more info
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: cleavage stimulation factor subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001328559.1 → NP_001315488.1 cleavage stimulation factor subunit 1

Status: VALIDATED

Source sequence(s)

BX601648, EH556892, EH592404

UniProtKB/TrEMBL

A0A8M1P431, F1QFK9

Related

ENSDARP00000111131.1, ENSDART00000130800.4

Conserved Domains (4) summary

COG2319
Location:104 → 428

WD40; WD40 repeat [General function prediction only]

cd00200
Location:100 → 424

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

pfam16699
Location:6 → 62

CSTF1_dimer; Cleavage stimulation factor subunit 1, dimerization domain

sd00039
Location:116 → 171

7WD40; WD40 repeat [structural motif]

RefSeqs of Annotated Genomes: Danio rerio Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007122.7 Reference GRCz11 Primary Assembly

Range

27817301..27827533 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_212670.1: Suppressed sequence

Description

NM_212670.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.