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    TTC6 tetratricopeptide repeat domain 6 [ Canis lupus familiaris (dog) ]

    Gene ID: 490659, updated on 5-Mar-2024

    Summary

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    Gene symbol
    TTC6
    Gene description
    tetratricopeptide repeat domain 6
    See related
    Ensembl:ENSCAFG00845003002
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See TTC6 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    34
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (16228390..16401165)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (15908632..16081397)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (16344675..16450102)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (15990022..16095392)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (15987232..16159825)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC119872845 Neighboring gene uncharacterized LOC119872846 Neighboring gene forkhead box A1 Neighboring gene prefoldin subunit 1 pseudogene Neighboring gene transfer RNA asparagine (anticodon GUU) Neighboring gene somatostatin receptor 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    tetratricopeptide repeat protein 6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      16228390..16401165
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038673480.1 → XP_038529408.1  tetratricopeptide repeat protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A8I3N3Y4
      Related
      ENSCAFP00845004243.1, ENSCAFT00845005328.1
      Conserved Domains (3) summary
      TIGR02917
      Location:608 → 1469
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1396 → 1422
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1462 → 1527
      TPR_12; Tetratricopeptide repeat

    2. XM_038673481.1 → XP_038529409.1  tetratricopeptide repeat protein 6 isoform X2

      Conserved Domains (3) summary
      PLN03088
      Location:1165 → 1269
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:325 → 1203
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1151 → 1177
      TPR; TPR repeat [structural motif]

    3. XM_038673482.1 → XP_038529410.1  tetratricopeptide repeat protein 6 isoform X3

      Conserved Domains (3) summary
      PLN03088
      Location:1123 → 1227
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:283 → 1161
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1109 → 1135
      TPR; TPR repeat [structural motif]

    4. XM_038673483.1 → XP_038529411.1  tetratricopeptide repeat protein 6 isoform X4

      UniProtKB/TrEMBL
      A0A8C0PLD8, A0A8P0SQJ4
      Related
      ENSCAFP00845004367.1, ENSCAFT00845005499.1
      Conserved Domains (4) summary
      smart00028
      Location:101 → 134
      TPR; Tetratricopeptide repeats
      TIGR02917
      Location:169 → 611
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:481 → 507
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:57 → 130
      TPR_12; Tetratricopeptide repeat

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      15990022..16095392
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038483100.1 → XP_038339028.1  tetratricopeptide repeat protein 6 isoform X2

      Conserved Domains (3) summary
      PLN03088
      Location:1165 → 1269
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:325 → 1203
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1151 → 1177
      TPR; TPR repeat [structural motif]

    2. XM_038483101.1 → XP_038339029.1  tetratricopeptide repeat protein 6 isoform X3

      Conserved Domains (3) summary
      PLN03088
      Location:1123 → 1227
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:283 → 1161
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1109 → 1135
      TPR; TPR repeat [structural motif]

    3. XM_038483102.1 → XP_038339030.1  tetratricopeptide repeat protein 6 isoform X4

      Conserved Domains (4) summary
      smart00028
      Location:101 → 134
      TPR; Tetratricopeptide repeats
      TIGR02917
      Location:169 → 611
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:481 → 507
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:57 → 130
      TPR_12; Tetratricopeptide repeat

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      15987232..16159825
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038608670.1 → XP_038464598.1  tetratricopeptide repeat protein 6 isoform X1

      Conserved Domains (3) summary
      TIGR02917
      Location:608 → 1469
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1396 → 1422
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1462 → 1527
      TPR_12; Tetratricopeptide repeat

    2. XM_038608671.1 → XP_038464599.1  tetratricopeptide repeat protein 6 isoform X2

      Conserved Domains (3) summary
      PLN03088
      Location:1165 → 1269
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:325 → 1203
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1151 → 1177
      TPR; TPR repeat [structural motif]

    3. XM_038608672.1 → XP_038464600.1  tetratricopeptide repeat protein 6 isoform X3

      Conserved Domains (3) summary
      PLN03088
      Location:1123 → 1227
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:283 → 1161
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1109 → 1135
      TPR; TPR repeat [structural motif]

    4. XM_038608673.1 → XP_038464601.1  tetratricopeptide repeat protein 6 isoform X4

      Conserved Domains (4) summary
      smart00028
      Location:101 → 134
      TPR; Tetratricopeptide repeats
      TIGR02917
      Location:169 → 611
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:481 → 507
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:57 → 130
      TPR_12; Tetratricopeptide repeat

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      16344675..16450102
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038544551.1 → XP_038400479.1  tetratricopeptide repeat protein 6 isoform X2

    2. XM_038544552.1 → XP_038400480.1  tetratricopeptide repeat protein 6 isoform X3

    3. XM_038544553.1 → XP_038400481.1  tetratricopeptide repeat protein 6 isoform X4

      UniProtKB/TrEMBL
      A0A8C0PLD8, A0A8P0SQJ4
      Conserved Domains (4) summary
      smart00028
      Location:101 → 134
      TPR; Tetratricopeptide repeats
      TIGR02917
      Location:169 → 611
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:481 → 507
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:57 → 130
      TPR_12; Tetratricopeptide repeat

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      15908632..16081397
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038585947.1 → XP_038441875.1  tetratricopeptide repeat protein 6 isoform X1

      UniProtKB/TrEMBL
      A0A8I3N3Y4
      Conserved Domains (3) summary
      TIGR02917
      Location:608 → 1469
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1396 → 1422
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:1462 → 1527
      TPR_12; Tetratricopeptide repeat

    2. XM_022421946.2 → XP_022277654.1  tetratricopeptide repeat protein 6 isoform X2

      Conserved Domains (3) summary
      PLN03088
      Location:1165 → 1269
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:325 → 1203
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1151 → 1177
      TPR; TPR repeat [structural motif]

    3. XM_022421947.2 → XP_022277655.1  tetratricopeptide repeat protein 6 isoform X3

      Conserved Domains (3) summary
      PLN03088
      Location:1123 → 1227
      PLN03088; SGT1, suppressor of G2 allele of SKP1; Provisional
      TIGR02917
      Location:283 → 1161
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:1109 → 1135
      TPR; TPR repeat [structural motif]

    4. XM_038585973.1 → XP_038441901.1  tetratricopeptide repeat protein 6 isoform X4

      UniProtKB/TrEMBL
      A0A8C0PLD8, A0A8P0SQJ4
      Conserved Domains (4) summary
      smart00028
      Location:101 → 134
      TPR; Tetratricopeptide repeats
      TIGR02917
      Location:169 → 611
      PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
      sd00006
      Location:481 → 507
      TPR; TPR repeat [structural motif]
      pfam13424
      Location:57 → 130
      TPR_12; Tetratricopeptide repeat
    Nucleotide Protein
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