APOBEC1 apolipoprotein B mRNA editing enzyme catalytic subunit 1 [Canis lupus familiaris (dog)] - Gene

Summary

Official Symbol: APOBEC1provided by VGNC
Official Full Name: apolipoprotein B mRNA editing enzyme catalytic subunit 1provided by VGNC
Primary source: VGNC:VGNC:37995
See related: Ensembl:ENSCAFG00845029656
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 27

Exon count:: 6

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	27	NC_051831.1 (37452077..37463466, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	27	NC_006609.4 (9502214..9513600)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	27	NC_049248.1 (8988480..8999873)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	27	NC_049287.1 (37333157..37344537, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	27	NC_049768.1 (37368031..37379426, complement)

Chromosome 27 - NC_051831.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables RNA binding	IEA Inferred from Electronic Annotation more info	PubMed
enables cytidine deaminase activity	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in DNA demethylation	IEA Inferred from Electronic Annotation more info	PubMed
involved_in cytidine to uridine editing	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info	PubMed
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: C->U-editing enzyme APOBEC-1

XP_005637246.1

EC 3.5.4.36

XP_038295009.1

EC 3.5.4.36

XP_038295010.1

EC 3.5.4.36

XP_038369666.1

EC 3.5.4.36

XP_038369667.1

EC 3.5.4.36

XP_038432641.1

EC 3.5.4.36

XP_038432642.1

EC 3.5.4.36

XP_038497510.1

EC 3.5.4.36

XP_038497511.1

EC 3.5.4.36

XP_543826.2

EC 3.5.4.36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051831.1 Reference ROS_Cfam_1.0

Range

37452077..37463466 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038439081.1 → XP_038295009.1 C->U-editing enzyme APOBEC-1

UniProtKB/TrEMBL

A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1
XM_038439082.1 → XP_038295010.1 C->U-editing enzyme APOBEC-1

UniProtKB/TrEMBL

A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8

Related

ENSCAFP00845041203.1, ENSCAFT00845052513.1

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1

Alternate UMICH_Zoey_3.1

Genomic

NC_049287.1 Alternate UMICH_Zoey_3.1

Range

37333157..37344537 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038513738.1 → XP_038369666.1 C->U-editing enzyme APOBEC-1

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1
XM_038513739.1 → XP_038369667.1 C->U-editing enzyme APOBEC-1

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049768.1 Alternate UNSW_CanFamBas_1.0

Range

37368031..37379426 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038641582.1 → XP_038497510.1 C->U-editing enzyme APOBEC-1

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1
XM_038641583.1 → XP_038497511.1 C->U-editing enzyme APOBEC-1

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049248.1 Alternate UU_Cfam_GSD_1.0

Range

8988480..8999873

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038576713.1 → XP_038432641.1 C->U-editing enzyme APOBEC-1

UniProtKB/TrEMBL

A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1
XM_038576714.1 → XP_038432642.1 C->U-editing enzyme APOBEC-1

UniProtKB/TrEMBL

A0A8C0PD63, A0A8C0TDD7, A0A8I3Q1H3, A0A8I3QKC8

Conserved Domains (2) summary

pfam05240
Location:108 → 186

APOBEC_C; APOBEC-like C-terminal domain

pfam18769
Location:44 → 144

APOBEC1

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006609.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

9502214..9513600

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_543826.5 → XP_543826.2 C->U-editing enzyme APOBEC-1

See identical proteins and their annotated locations for XP_543826.2

UniProtKB/TrEMBL

A0A8P0NFU8, A0A8P0NYA6

Conserved Domains (3) summary

pfam05240
Location:125 → 177

APOBEC_C; APOBEC-like C-terminal domain

pfam08210
Location:33 → 157

APOBEC_N; APOBEC-like N-terminal domain

cl00269
Location:33 → 106

cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
XM_005637189.3 → XP_005637246.1 C->U-editing enzyme APOBEC-1

See identical proteins and their annotated locations for XP_005637246.1

UniProtKB/TrEMBL

A0A8P0NFU8, A0A8P0NYA6

Conserved Domains (3) summary

pfam05240
Location:125 → 177

APOBEC_C; APOBEC-like C-terminal domain

pfam08210
Location:33 → 157

APOBEC_N; APOBEC-like N-terminal domain

cl00269
Location:33 → 106

cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...