LOC485143 tripartite motif-containing protein 64 [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: LOC485143
Gene description: tripartite motif-containing protein 64
See related: Ensembl:ENSCAFG00845025305
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as: TRIM64
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Genomic context

Location:: chromosome: 21

Exon count:: 7

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	21	NC_051825.1 (10562973..10571450, complement)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	21	NC_006603.4 (10233024..10241500, complement)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	21	NC_049242.1 (10466652..10475135, complement)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	21	NC_049281.1 (10351535..10360019, complement)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	21	NC_049762.1 (10410185..10418674, complement)

Chromosome 21 - NC_051825.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

BAC_382-G16 (e-PCR)
- UniSTS:262648

Homology

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed
enables zinc ion binding	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: tripartite motif-containing protein 64

Names: tripartite motif containing 64

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051825.1 Reference ROS_Cfam_1.0

Range

10562973..10571450 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038429556.1 → XP_038285484.1 tripartite motif-containing protein 64

UniProtKB/TrEMBL

A0A8I3PTX0

Related

ENSCAFP00845034967.1, ENSCAFT00845044630.1

Conserved Domains (4) summary

PRK03918
Location:132 → 256

PRK03918; DNA double-strand break repair ATPase Rad50

cd16603
Location:12 → 56

RING-HC_TRIM43_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cd19783
Location:90 → 139

Bbox2_TRIM43-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cl02614
Location:285 → 450

SPRY; SPRY domain

Alternate UMICH_Zoey_3.1

Genomic

NC_049281.1 Alternate UMICH_Zoey_3.1

Range

10351535..10360019 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038506142.1 → XP_038362070.1 tripartite motif-containing protein 64

Conserved Domains (4) summary

PRK03918
Location:132 → 256

PRK03918; DNA double-strand break repair ATPase Rad50

cd16603
Location:12 → 56

RING-HC_TRIM43_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cd19783
Location:90 → 139

Bbox2_TRIM43-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cl02614
Location:285 → 450

SPRY; SPRY domain

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049762.1 Alternate UNSW_CanFamBas_1.0

Range

10410185..10418674 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038632237.1 → XP_038488165.1 tripartite motif-containing protein 64

Conserved Domains (4) summary

PRK03918
Location:132 → 256

PRK03918; DNA double-strand break repair ATPase Rad50

cd16603
Location:12 → 56

RING-HC_TRIM43_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cd19783
Location:90 → 139

Bbox2_TRIM43-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cl02614
Location:285 → 450

SPRY; SPRY domain

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049242.1 Alternate UU_Cfam_GSD_1.0

Range

10466652..10475135 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038568141.1 → XP_038424069.1 tripartite motif-containing protein 64

UniProtKB/TrEMBL

A0A8I3PTX0

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

10233024..10241500 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005633377.4 → XP_005633434.3 tripartite motif-containing protein 64

UniProtKB/TrEMBL

A0A8I3PTX0, A0A8P0PMW6

Conserved Domains (4) summary

PRK03918
Location:132 → 256

PRK03918; DNA double-strand break repair ATPase Rad50

cd16603
Location:12 → 56

RING-HC_TRIM43_like_C-IV; RING finger, HC subclass, found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cd19783
Location:90 → 139

Bbox2_TRIM43-like; B-box-type 2 zinc finger found in tripartite motif-containing proteins TRIM43, TRIM48, TRIM49, TRIM51, TRIM64, TRIM77 and similar proteins

cl02614
Location:285 → 450

SPRY; SPRY domain