NCBI
 dbSNP
dbVar ClinVar GaP PubMed Nucleotide Protein
Search small variations in dbSNP or large structural variations in dbVar
transparent GIF
Spacer gif
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
View SNP Submission Batch
Submitter Handle:KWOK
Submitter Batch ID:OVLP-000804-19
Submitter Method ID:OverlapSnpDetectionWithPolyBayes
Citation:A general approach to single-nucleotide polymorphism discoveryOverlapping genomic sequences: a treasure trove of single-nucleotide polymorphisms
Comment:submitted value for SNPASSAY-POPULATION tag: LargeInsertGenomicCl
Batch Total SubSNP(ss) Count:919
Method Extra Detail:Success rate is assigned as the SNP probability score computed by the POLYBAYES SNP discovery programOverlap detection parameters MinTotalOverlapLength:6000 MinDiscrepancyRate:0.002 MaxDiscrepancyRate:0.0001SNP detection parameters (PolyBayes) ExpectedPolymorphismRateBetweenPairs:0.001


SubSNP(ss) Submitter
SNP_ID		 SNP
Allele		 Samplesize RefSNP(rs) ss2rs
Orien		 Chr ChrPos Contig
Accession		 Contig
Pos
ss1067839 OVLP-000804-5438 A/G 4 rs813983 0 1 9020675 NT_032977.10 8434687
ss1067845 OVLP-000804-8742 A/G 4 rs813983 0 1 9020675 NT_032977.10 8434687
ss1067834 OVLP-000804-2537 C/T 4 rs624746 0 1 75217834 NT_032977.10 74631846
ss1067855 OVLP-000804-21526 A/G 4 rs192339 0 11 43029719 NT_009237.19 42969719
ss1067843 OVLP-000804-8386 A/G 4 rs149889 0 13 50491718 NT_024524.15 32083612
ss1067841 OVLP-000804-8365 C/T 4 rs192492 0 13 50511561 NT_024524.15 32103455
ss1067844 OVLP-000804-8607 C/T 4 rs565136 1 13 89208648 NT_009952.15 2955669
ss1067850 OVLP-000804-10165 G/T 4 rs378708 0 15 65980421 NT_010194.18 42703547
ss1067847 OVLP-000804-8926 A/G 4 rs192537 0 15 79756784 NT_010194.18 56479910
ss1067856 OVLP-000804-21914 A/C 4 rs192354 0 15 87997880 NT_010194.18 64721006
ss1067851 OVLP-000804-13843 A/G 4 rs192352 0 18 10962301 NT_010859.15 10952301
ss1067853 OVLP-000804-19880 C/T 4 rs192455 1 3 148671031 NT_005612.17 54965457
ss1067858 OVLP-000804-24451 A/G 4 rs813992 0 3 148681817 NT_005612.17 54976243
ss1067830 OVLP-000804-566 A/G 4 rs813977 0 3 192928260 NT_005612.17 99222686
ss1067831 OVLP-000804-570 C/G 4 rs813978 1 3 192929068 NT_005612.17 99223494
ss1067840 OVLP-000804-5485 A/C 4 rs477929 0 4 49222078 NT_006238.12 16383062
ss1067832 OVLP-000804-1287 A/G 4 rs813979 0 4 139959168 NT_016354.20 81037787
ss1067849 OVLP-000804-9425 C/G 4 rs493115 1 5 174488610 NT_023133.14 18727286
ss1067848 OVLP-000804-9422 C/T 4 rs651515 0 5 174488781 NT_023133.14 18727457
ss1067829 OVLP-000804-75 A/G 4 rs680040 1 6 65249059 NT_025741.16 5019125
ss1067852 OVLP-000804-17847 A/G 4 rs192344 0 8 130815182 NT_008046.17 45100960
ss1067857 OVLP-000804-22962 C/T 4 rs192465 0 9 15582783 NT_008413.19 15572783
ss1067837 OVLP-000804-5325 A/G 4 rs813981 0 9 77488831 NT_008470.20 9268279
ss1067838 OVLP-000804-5326 G/T 4 rs621561 0 9 77488858 NT_008470.20 9268306
ss1067836 OVLP-000804-5316 A/G 4 rs667490 0 9 77517157 NT_008470.20 9296605
ss1067835 OVLP-000804-5315 A/G 4 rs570803 0 9 77517190 NT_008470.20 9296638
ss1067833 OVLP-000804-1583 C/T 4 rs497660 0 9 105660026 NT_008470.20 37439474
ss1067842 OVLP-000804-8383 A/C 4 N.D. N.D.
ss1067846 OVLP-000804-8910 C/T 4 N.D. N.D.
ss1067854 OVLP-000804-20615 A/G 4 N.D. N.D.
30 of 919 subsnp's starting at ss1067839. ss# starting at ss

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement