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    DERA deoxyribose-phosphate aldolase [ Gallus gallus (chicken) ]

    Gene ID: 418176, updated on 3-Apr-2024

    Summary

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    Symbol
    DERAprovided by CGNC
    Full Name
    deoxyribose-phosphate aldolaseprovided by CGNC
    Primary source
    CGNC:9901
    See related
    Ensembl:ENSGALG00010012957
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Gallus gallus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 1 NC_052532.1 (63168776..63223112)
    106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 1 NC_052573.1 (63488474..63542433)

    Chromosome 1 - NC_052532.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121108252 Neighboring gene uncharacterized LOC107054199 Neighboring gene serine/threonine kinase receptor associated protein Neighboring gene uncharacterized LOC112530033 Neighboring gene solute carrier family 15 member 5

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables deoxyribose-phosphate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in deoxyribonucleotide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    deoxyribose-phosphate aldolase
    Names
    2-deoxyribose-5-phosphate aldolase homolog
    deoxyribose-phosphate aldolase (putative)
    putative deoxyribose-phosphate aldolase
    NP_001006248.1
    NP_001384033.1
    NP_001384034.1
    NP_001384035.1
    NP_001384036.1
    NP_001384037.1
    XP_046763563.1
    XP_046763564.1
    XP_046795247.1
    XP_046795249.1
    XP_046795252.1
    XP_046795253.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001006248.2 → NP_001006248.1  deoxyribose-phosphate aldolase isoform b

      See identical proteins and their annotated locations for NP_001006248.1

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A8V0YHT7, Q5ZMM6
      Related
      ENSGALP00010018100.1, ENSGALT00010031106.1
      Conserved Domains (1) summary
      cd00959
      Location:50 → 277
      DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

    2. NM_001397104.1 → NP_001384033.1  deoxyribose-phosphate aldolase isoform a

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012
      UniProtKB/TrEMBL
      A0A8V0YBE2, A0A8V0YGT6
      Related
      ENSGALP00010018088.1, ENSGALT00010031094.1
      Conserved Domains (1) summary
      cd00959
      Location:83 → 310
      DeoC; 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

    3. NM_001397105.1 → NP_001384034.1  deoxyribose-phosphate aldolase isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012

    4. NM_001397106.1 → NP_001384035.1  deoxyribose-phosphate aldolase isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012

    5. NM_001397107.1 → NP_001384036.1  deoxyribose-phosphate aldolase isoform c

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012

    6. NM_001397108.1 → NP_001384037.1  deoxyribose-phosphate aldolase isoform d

      Status: VALIDATED

      Source sequence(s)
      JAENSK010000012

    RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Genomic

    1. NC_052532.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

      Range
      63168776..63223112
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046939293.1 → XP_046795249.1  deoxyribose-phosphate aldolase isoform X2

    2. XM_046939291.1 → XP_046795247.1  deoxyribose-phosphate aldolase isoform X1

    3. XM_046939297.1 → XP_046795253.1  deoxyribose-phosphate aldolase isoform X4

    4. XM_046939296.1 → XP_046795252.1  deoxyribose-phosphate aldolase isoform X3

    Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Genomic

    1. NC_052573.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

      Range
      63488474..63542433
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_046907608.1 → XP_046763564.1  deoxyribose-phosphate aldolase isoform X2

    2. XM_046907607.1 → XP_046763563.1  deoxyribose-phosphate aldolase isoform X5

    Nucleotide Protein Strain
    Heading Accession and Version

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