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KCNC1 potassium voltage-gated channel subfamily C member 1 [ Canis lupus familiaris (dog) ]

Gene ID: 403705, updated on 5-Mar-2024

Summary

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Official Symbol
KCNC1provided by VGNC
Official Full Name
potassium voltage-gated channel subfamily C member 1provided by VGNC
Primary source
VGNC:VGNC:42236
See related
Ensembl:ENSCAFG00845014972
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Also known as
KV3.1
Orthologs
human mouse all
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Genomic context

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See KCNC1 in Genome Data Viewer
Location:
chromosome: 21
Exon count:
6
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 21 NC_051825.1 (41377580..41419665)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 21 NC_006603.4 (39773451..39814777)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 21 NC_049242.1 (40937508..40978698)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 21 NC_049281.1 (40391108..40432406)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 21 NC_049762.1 (40598959..40640287)

Chromosome 21 - NC_051825.1Genomic Context describing neighboring genes Neighboring gene otogelin Neighboring gene myogenic differentiation 1 Neighboring gene secretion regulating guanine nucleotide exchange factor Neighboring gene U6 spliceosomal RNA Neighboring gene tigger transposable element-derived protein 1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Molecular evidence for a role of Shaw (Kv3) potassium channel subunits in potassium currents of dog atrium. Yue L, et al. J Physiol, 2000 Sep 15. PMID 10990534, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables delayed rectifier potassium channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein homooligomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axon IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in dendrite membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in neuronal cell body membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of voltage-gated potassium channel complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
potassium voltage-gated channel subfamily C member 1
Names
potassium voltage-gated channel, Shaw-related subfamily, member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001003113.1 → NP_001003113.1  potassium voltage-gated channel subfamily C member 1

    Status: PROVISIONAL

    Source sequence(s)
    AF153198
    UniProtKB/TrEMBL
    A0A8C0L224, Q9XSJ8
    Related
    ENSCAFP00845021097.1, ENSCAFT00845026789.1
    Conserved Domains (4) summary
    smart00225
    Location:10 → 112
    BTB; Broad-Complex, Tramtrack and Bric a brac
    pfam00520
    Location:235 → 447
    Ion_trans; Ion transport protein
    pfam02214
    Location:10 → 104
    BTB_2; BTB/POZ domain
    pfam07885
    Location:390 → 437
    Ion_trans_2; Ion channel

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051825.1 Reference ROS_Cfam_1.0

    Range
    41377580..41419665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038429444.1 → XP_038285372.1  potassium voltage-gated channel subfamily C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TN86
    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:189 → 447
    Ion_trans; Ion transport protein

  2. XM_038429445.1 → XP_038285373.1  potassium voltage-gated channel subfamily C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TN86
    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:189 → 447
    Ion_trans; Ion transport protein

  3. XM_038429446.1 → XP_038285374.1  potassium voltage-gated channel subfamily C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TN86
    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:189 → 447
    Ion_trans; Ion transport protein

  4. XM_038429447.1 → XP_038285375.1  potassium voltage-gated channel subfamily C member 1 isoform X1

    UniProtKB/TrEMBL
    A0A8C0TN86
    Conserved Domains (2) summary
    cd18414
    Location:6 → 122
    BTB_KCNC1_3; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in potassium voltage-gated channel subfamily C members KCNC1 and KCNC3
    pfam00520
    Location:189 → 447
    Ion_trans; Ion transport protein

RNA

  1. XR_005298350.1 RNA Sequence

  2. XR_005298343.1 RNA Sequence

  3. XR_005298346.1 RNA Sequence

  4. XR_005298344.1 RNA Sequence

  5. XR_005298349.1 RNA Sequence

  6. XR_005298345.1 RNA Sequence

  7. XR_005298348.1 RNA Sequence

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049281.1 Alternate UMICH_Zoey_3.1

    Range
    40391108..40432406
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049762.1 Alternate UNSW_CanFamBas_1.0

    Range
    40598959..40640287
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049242.1 Alternate UU_Cfam_GSD_1.0

    Range
    40937508..40978698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006603.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    39773451..39814777
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein
Heading Accession and Version

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