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GPNMB glycoprotein nmb [ Canis lupus familiaris (dog) ]

Gene ID: 482355, updated on 2-Oct-2021

Summary

Official Symbol
GPNMBprovided by VGNC
Official Full Name
glycoprotein nmbprovided by VGNC
Primary source
VGNC:VGNC:41389
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
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Genomic context

See GPNMB in Genome Data Viewer
Location:
chromosome: 14
Exon count:
11
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (36845151..36877705)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (36460144..36487696)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (36998735..37025688)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (36964735..36992553)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (36662258..36689076)
105 previous assembly CanFam3.1 (GCF_000002285.3) 14 NC_006596.3 (36919184..36947023)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene kelch like family member 7 Neighboring gene nucleoporin 42 Neighboring gene U6 spliceosomal RNA Neighboring gene mitochondrial assembly of ribosomal large subunit 1 Neighboring gene insulin like growth factor 2 mRNA binding protein 3

Genomic regions, transcripts, and products

General gene information

Homology

General protein information

Preferred Names
transmembrane glycoprotein NMB

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    36845151..36877705
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038685954.1XP_038541882.1  transmembrane glycoprotein NMB isoform X1

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    36964735..36992553
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038494824.1XP_038350752.1  transmembrane glycoprotein NMB isoform X2

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    36662258..36689076
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621040.1XP_038476968.1  transmembrane glycoprotein NMB isoform X3

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    36998735..37025688
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557100.1XP_038413028.1  transmembrane glycoprotein NMB isoform X4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    36460144..36487696
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_539472.7XP_539472.2  transmembrane glycoprotein NMB isoform X5

    UniProtKB/TrEMBL
    E2QUR7
    Conserved Domains (1) summary
    cd00146
    Location:253313
    PKD; polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is ...
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