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LRRN3 leucine rich repeat neuronal 3 [ Canis lupus familiaris (dog) ]

Gene ID: 482406, updated on 5-Mar-2024

Summary

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Official Symbol
LRRN3provided by VGNC
Official Full Name
leucine rich repeat neuronal 3provided by VGNC
Primary source
VGNC:VGNC:42826
See related
Ensembl:ENSCAFG00845030033
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs
human mouse all
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Genomic context

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See LRRN3 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
3
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 14 NC_051818.1 (50849398..50884609)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 14 NC_006596.4 (50347780..50382993)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 14 NC_049235.1 (51010041..51045270)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 14 NC_049274.1 (50954378..50989584)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 14 NC_049755.1 (50637915..50673104)

Chromosome 14 - NC_051818.1Genomic Context describing neighboring genes Neighboring gene inner mitochondrial membrane peptidase subunit 2 Neighboring gene uncharacterized LOC119874513 Neighboring gene uncharacterized LOC111098833 Neighboring gene uncharacterized LOC102153552 Neighboring gene platelet-activating factor acetylhydrolase IB subunit alpha1-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat neuronal protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051818.1 Reference ROS_Cfam_1.0

    Range
    50849398..50884609
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038686994.1 → XP_038542922.1  leucine-rich repeat neuronal protein 3

    UniProtKB/TrEMBL
    A0A8C0M940, A0A8C0QWA6, A0A8I3Q4W9
    Related
    ENSCAFP00845041780.1, ENSCAFT00845053209.1
    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

  2. XM_038686993.1 → XP_038542921.1  leucine-rich repeat neuronal protein 3

    UniProtKB/TrEMBL
    A0A8C0M940, A0A8C0QWA6, A0A8I3Q4W9
    Related
    ENSCAFP00845041759.1, ENSCAFT00845053187.1
    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049274.1 Alternate UMICH_Zoey_3.1

    Range
    50954378..50989584
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038495093.1 → XP_038351021.1  leucine-rich repeat neuronal protein 3

  2. XM_038495092.1 → XP_038351020.1  leucine-rich repeat neuronal protein 3

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049755.1 Alternate UNSW_CanFamBas_1.0

    Range
    50637915..50673104
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038621309.1 → XP_038477237.1  leucine-rich repeat neuronal protein 3

    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

  2. XM_038621308.1 → XP_038477236.1  leucine-rich repeat neuronal protein 3

    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049235.1 Alternate UU_Cfam_GSD_1.0

    Range
    51010041..51045270
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038557362.1 → XP_038413290.1  leucine-rich repeat neuronal protein 3

    UniProtKB/TrEMBL
    A0A8C0M940, A0A8C0QWA6, A0A8I3Q4W9
    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

  2. XM_038557361.1 → XP_038413289.1  leucine-rich repeat neuronal protein 3

    UniProtKB/TrEMBL
    A0A8C0M940, A0A8C0QWA6, A0A8I3Q4W9
    Conserved Domains (8) summary
    TIGR00864
    Location:341 → 405
    PCC; polycystin cation channel protein
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    COG4886
    Location:75 → 355
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam13927
    Location:427 → 500
    Ig_3; Immunoglobulin domain
    cd00096
    Location:421 → 424
    Ig; Ig strand A [structural motif]

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006596.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    50347780..50382993
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005628735.4 → XP_005628792.1  leucine-rich repeat neuronal protein 3

    See identical proteins and their annotated locations for XP_005628792.1

    UniProtKB/TrEMBL
    A0A8C0YYG7, A0A8P0S956
    Conserved Domains (9) summary
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:368 → 405
    LRRCT; Leucine rich repeat C-terminal domain
    pfam07679
    Location:429 → 513
    I-set; Immunoglobulin I-set domain
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam12799
    Location:116 → 157
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:93 → 152
    LRR_8; Leucine rich repeat
    cl11960
    Location:437 → 513
    Ig; Immunoglobulin domain

  2. XM_539523.7 → XP_539523.1  leucine-rich repeat neuronal protein 3

    See identical proteins and their annotated locations for XP_539523.1

    UniProtKB/TrEMBL
    A0A8C0YYG7, A0A8P0S956
    Conserved Domains (9) summary
    smart00013
    Location:28 → 72
    LRRNT; Leucine rich repeat N-terminal domain
    smart00082
    Location:368 → 405
    LRRCT; Leucine rich repeat C-terminal domain
    pfam07679
    Location:429 → 513
    I-set; Immunoglobulin I-set domain
    sd00031
    Location:336 → 359
    LRR_1; leucine-rich repeat [structural motif]
    sd00033
    Location:94 → 117
    LRR_RI; leucine-rich repeat [structural motif]
    pfam00041
    Location:526 → 593
    fn3; Fibronectin type III domain
    pfam12799
    Location:116 → 157
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:93 → 152
    LRR_8; Leucine rich repeat
    cl11960
    Location:437 → 513
    Ig; Immunoglobulin domain
Nucleotide Protein
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