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    RTN1 reticulon 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 474178, updated on 5-Mar-2024

    Summary

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    Official Symbol
    RTN1provided by VGNC
    Official Full Name
    reticulon 1provided by VGNC
    Primary source
    VGNC:VGNC:51680
    See related
    Ensembl:ENSCAFG00845020712
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See RTN1 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 8 NC_051812.1 (35045762..35265091, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 8 NC_006590.4 (34570781..34595578, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 8 NC_049229.1 (35099496..35124329, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 8 NC_049268.1 (34663165..34687986, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 8 NC_049749.1 (34732285..34757112, complement)

    Chromosome 8 - NC_051812.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 175 Neighboring gene protein Asterix-like Neighboring gene uncharacterized LOC111097221 Neighboring gene protein enabled homolog Neighboring gene uncharacterized LOC111097060 Neighboring gene leucine rich repeat containing 9

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A reticular rhapsody: phylogenic evolution and nomenclature of the RTN/Nogo gene family. Oertle T, et al. FASEB J, 2003 Jul. PMID 12832288

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in brain development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in endoplasmic reticulum tubular network formation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuron differentiation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in neuron projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in postsynaptic density IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    reticulon-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007131.1 → NP_001007132.1  reticulon-1

      Status: VALIDATED

      Source sequence(s)
      BK001793
      UniProtKB/TrEMBL
      A0A8C0LTI1, Q6IM72
      Related
      ENSCAFP00845028687.1, ENSCAFT00845036651.1
      Conserved Domains (1) summary
      pfam02453
      Location:23 → 185
      Reticulon; Reticulon

    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051812.1 Reference ROS_Cfam_1.0

      Range
      35045762..35265091 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038672875.1 → XP_038528803.1  reticulon-1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0LZP7, A0A8I3P940, A0A8P0SQY0
      Related
      ENSCAFP00845028746.1, ENSCAFT00845036717.1
      Conserved Domains (2) summary
      PHA03307
      Location:273 → 575
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam02453
      Location:598 → 760
      Reticulon

    2. XM_038672876.1 → XP_038528804.1  reticulon-1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0K647
      Conserved Domains (2) summary
      PHA03307
      Location:197 → 499
      PHA03307; transcriptional regulator ICP4; Provisional
      pfam02453
      Location:522 → 684
      Reticulon

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049268.1 Alternate UMICH_Zoey_3.1

      Range
      34663165..34687986 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049749.1 Alternate UNSW_CanFamBas_1.0

      Range
      34732285..34757112 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049229.1 Alternate UU_Cfam_GSD_1.0

      Range
      35099496..35124329 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006590.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      34570781..34595578 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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