U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Nucleotide

    • Showing Current items.

    CTTNBP2 cortactin binding protein 2 [ Sus scrofa (pig) ]

    Gene ID: 100517505, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CTTNBP2provided by VGNC
    Official Full Name
    cortactin binding protein 2provided by VGNC
    Primary source
    VGNC:VGNC:110293
    See related
    Ensembl:ENSSSCG00000016625
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Sus scrofa
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
    Also known as
    CORTBP2
    Expression
    Broad expression in kidney (RPKM 7.6), mixtures (RPKM 2.3) and 6 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See CTTNBP2 in Genome Data Viewer
    Location:
    chromosome: 18
    Exon count:
    28
    Annotation release Status Assembly Chr Location
    106 current Sscrofa11.1 (GCF_000003025.6) 18 NC_010460.4 (28130213..28573166)
    105 previous assembly Sscrofa10.2 (GCF_000003025.5) 18 NC_010460.3 (30230103..30342035)

    Chromosome 18 - NC_010460.4Genomic Context describing neighboring genes Neighboring gene ADP-sugar pyrophosphatase pseudogene Neighboring gene ankyrin repeat domain 7 Neighboring gene LSM8 homolog, U6 small nuclear RNA associated Neighboring gene CF transmembrane conductance regulator Neighboring gene ankyrin repeat, SAM and basic leucine zipper domain containing 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Transcriptome data used for gene annotation
    • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
    • BioProject: PRJNA311523
    • Publication: PMID 27646534
    • Analysis date: Thu Dec 14 17:10:49 2017

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Comparative analyses of multi-species sequences from targeted genomic regions. Thomas JW, et al. Nature, 2003 Aug 14. PMID 12917688

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of synapse organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in glutamatergic synapse IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    cortactin-binding protein 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Sscrofa11.1 Primary Assembly

    Genomic

    1. NC_010460.4 Reference Sscrofa11.1 Primary Assembly

      Range
      28130213..28573166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021078653.1 → XP_020934312.1  cortactin-binding protein 2 isoform X1

      UniProtKB/TrEMBL
      A0A8D1CQI3
      Conserved Domains (6) summary
      COG0666
      Location:749 → 943
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:848 → 973
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:886 → 917
      ANK; ANK repeat [structural motif]
      pfam09727
      Location:145 → 289
      CortBP2; Cortactin-binding protein-2
      cl25732
      Location:236 → 380
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:380 → 823
      Atrophin-1; Atrophin-1 family

    2. XM_021078654.1 → XP_020934313.1  cortactin-binding protein 2 isoform X2

      UniProtKB/TrEMBL
      A0A8D0Y3A0
      Conserved Domains (6) summary
      COG0666
      Location:659 → 853
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:758 → 883
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:796 → 827
      ANK; ANK repeat [structural motif]
      pfam09727
      Location:55 → 199
      CortBP2; Cortactin-binding protein-2
      cl25732
      Location:135 → 290
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:290 → 733
      Atrophin-1; Atrophin-1 family

    3. XM_021078656.1 → XP_020934315.1  cortactin-binding protein 2 isoform X4

      UniProtKB/TrEMBL
      A0A8D0TX83
      Conserved Domains (6) summary
      COG0666
      Location:598 → 792
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:697 → 822
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:735 → 766
      ANK; ANK repeat [structural motif]
      pfam09727
      Location:1 → 138
      CortBP2; Cortactin-binding protein-2
      cl25732
      Location:69 → 229
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:229 → 672
      Atrophin-1; Atrophin-1 family

    4. XM_021078655.1 → XP_020934314.1  cortactin-binding protein 2 isoform X3

      UniProtKB/TrEMBL
      A0A4X1W2G3, F1SJF2
      Related
      ENSSSCP00000017609.3, ENSSSCT00000018099.5
      Conserved Domains (6) summary
      COG0666
      Location:640 → 834
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:739 → 864
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:777 → 808
      ANK; ANK repeat [structural motif]
      pfam09727
      Location:36 → 180
      CortBP2; Cortactin-binding protein-2
      cl25732
      Location:116 → 271
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:271 → 714
      Atrophin-1; Atrophin-1 family

    5. XM_021078657.1 → XP_020934316.1  cortactin-binding protein 2 isoform X5

      UniProtKB/TrEMBL
      A0A8D1QVC6, Q2QLD4
      Conserved Domains (5) summary
      COG0666
      Location:500 → 694
      ANKYR; Ankyrin repeat [Signal transduction mechanisms]
      cd00204
      Location:599 → 724
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      sd00045
      Location:637 → 668
      ANK; ANK repeat [structural motif]
      cl25732
      Location:1 → 131
      SMC_N; RecF/RecN/SMC N terminal domain
      cl26464
      Location:131 → 574
      Atrophin-1; Atrophin-1 family

    RNA

    1. XR_002340261.1 RNA Sequence

    2. XR_002340262.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.