PWP2 PWP2 small subunit processome component [Canis lupus familiaris (dog)] - Gene

Summary

Gene symbol: PWP2
Gene description: PWP2 small subunit processome component
See related: Ensembl:ENSCAFG00845019135
Gene type: protein coding
RefSeq status: MODEL
Organism: Canis lupus familiaris (sub-species: familiaris)
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 31

Exon count:: 21

Annotation release	Status	Assembly	Chr	Location
106	current	ROS_Cfam_1.0 (GCF_014441545.1)	31	NC_051835.1 (37547946..37560665)
106	current	Dog10K_Boxer_Tasha (GCF_000002285.5)	31	NC_006613.4 (37157745..37170451)
106	current	UU_Cfam_GSD_1.0 (GCF_011100685.1)	31	NC_049252.1 (37893793..37906472)
106	current	UMICH_Zoey_3.1 (GCF_005444595.1)	31	NC_049291.1 (37415061..37427758)
106	current	UNSW_CanFamBas_1.0 (GCF_013276365.1)	31	NC_049772.1 (37399004..37411676)

Chromosome 31 - NC_051835.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Homology

NCBI Orthologs

Orthologs from OrthoDB

Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables protein binding	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEA Inferred from Electronic Annotation more info	PubMed
involved_in ribosomal small subunit assembly	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
part_of Pwp2p-containing subcomplex of 90S preribosome	IEA Inferred from Electronic Annotation more info	PubMed
part_of small-subunit processome	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: periodic tryptophan protein 2 homolog

Names: PWP2 periodic tryptophan protein homolog; PWP2, UTPB SSU processome subunit

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

NC_051835.1 Reference ROS_Cfam_1.0

Range

37547946..37560665

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038443631.1 → XP_038299559.1 periodic tryptophan protein 2 homolog

UniProtKB/TrEMBL

A0A8C0SJ98, A0A8I3PGB8

Related

ENSCAFP00845026598.1, ENSCAFT00845033989.1

Conserved Domains (4) summary

cd00200
Location:321 → 582

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:332 → 370

7WD40; WD40 repeat [structural motif]

pfam04003
Location:769 → 874

Utp12; Dip2/Utp12 Family

cl29593
Location:96 → 442

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

Alternate UMICH_Zoey_3.1

Genomic

NC_049291.1 Alternate UMICH_Zoey_3.1

Range

37415061..37427758

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038518042.1 → XP_038373970.1 periodic tryptophan protein 2 homolog

Alternate UNSW_CanFamBas_1.0

Genomic

NC_049772.1 Alternate UNSW_CanFamBas_1.0

Range

37399004..37411676

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038646007.1 → XP_038501935.1 periodic tryptophan protein 2 homolog

Alternate UU_Cfam_GSD_1.0

Genomic

NC_049252.1 Alternate UU_Cfam_GSD_1.0

Range

37893793..37906472

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_038581615.1 → XP_038437543.1 periodic tryptophan protein 2 homolog

UniProtKB/TrEMBL

A0A8C0SJ98

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

NC_006613.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

Range

37157745..37170451

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_544915.8 → XP_544915.5 periodic tryptophan protein 2 homolog

UniProtKB/TrEMBL

A0A8C0SJ98, A0A8P0NCL7

Conserved Domains (4) summary

cd00200
Location:321 → 582

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

sd00039
Location:332 → 370

7WD40; WD40 repeat [structural motif]

pfam04003
Location:769 → 874

Utp12; Dip2/Utp12 Family

cl29593
Location:96 → 442

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...