U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from Protein

    • Showing Current items.

    Ciita class II major histocompatibility complex transactivator [ Mesocricetus auratus (golden hamster) ]

    Gene ID: 101825611, updated on 8-Mar-2024

    Summary

    Go to the top of the page Help
    Gene symbol
    Ciita
    Gene description
    class II major histocompatibility complex transactivator
    See related
    EnsemblRapid:ENSMAUG00000011847
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Mesocricetus auratus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Mesocricetus
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    chromosome: Un
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    103 current BCM_Maur_2.0 (GCF_017639785.1) Unplaced Scaffold NW_024429191.1 (1619419..1670781, complement)
    102 previous assembly MesAur1.0 (GCF_000349665.1) Unplaced Scaffold NW_004801777.1 (2603446..2654861)

    NW_024429191.1Genomic Context describing neighboring genes Neighboring gene C-type lectin domain containing 16A Neighboring gene Dexi homolog Neighboring gene trans-golgi network vesicle protein 23 homolog A Neighboring gene uncharacterized LOC110343645 Neighboring gene NUBP iron-sulfur cluster assembly factor 1, cytosolic

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Transcriptome sequencing and development of an expression microarray platform for liver infection in adenovirus type 5-infected Syrian golden hamsters. Ying B, et al. Virology, 2015 Nov. PMID 26319212, Free PMC Article
    2. De novo assembly, annotation, and characterization of the whole brain transcriptome of male and female Syrian hamsters. McCann KE, et al. Sci Rep, 2017 Jan 10. PMID 28071753, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in inflammatory response IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of MHC class I biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of MHC class II biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    MHC class II transactivator

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Mesocricetus auratus Annotation Release 103 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference BCM_Maur_2.0 Primary Assembly

    Genomic

    1. NW_024429191.1 Reference BCM_Maur_2.0 Primary Assembly

      Range
      1619419..1670781 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_021235594.2 → XP_021091253.1  MHC class II transactivator isoform X6

      UniProtKB/TrEMBL
      A0A3Q0DEQ8
      Conserved Domains (4) summary
      cd00116
      Location:816 → 1142
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:1013 → 1040
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:445 → 614
      NACHT; NACHT domain
      cl26464
      Location:224 → 442
      Atrophin-1; Atrophin-1 family

    2. XM_040748100.1 → XP_040604034.1  MHC class II transactivator isoform X7

      Conserved Domains (4) summary
      PHA03377
      Location:197 → 425
      PHA03377; EBNA-3C; Provisional
      cd00116
      Location:861 → 1134
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:948 → 972
      LRR_RI; leucine-rich repeat [structural motif]
      sd00034
      Location:1005 → 1032
      LRR_AMN1; leucine-rich repeat [structural motif]

    3. XM_040748099.1 → XP_040604033.1  MHC class II transactivator isoform X5

      Conserved Domains (3) summary
      PHA03377
      Location:197 → 425
      PHA03377; EBNA-3C; Provisional
      cd00116
      Location:861 → 1160
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:1032 → 1061
      LRR_RI; leucine-rich repeat [structural motif]

    4. XM_021235593.2 → XP_021091252.1  MHC class II transactivator isoform X4

      UniProtKB/TrEMBL
      A0A3Q0DDZ8
      Conserved Domains (4) summary
      cd00116
      Location:860 → 1185
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:1057 → 1084
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:489 → 658
      NACHT; NACHT domain
      cl27975
      Location:212 → 424
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    5. XM_021235592.2 → XP_021091251.1  MHC class II transactivator isoform X3

      UniProtKB/TrEMBL
      A0A3Q0DEU1
      Conserved Domains (4) summary
      cd00116
      Location:860 → 1186
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:1057 → 1084
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:489 → 658
      NACHT; NACHT domain
      cl27975
      Location:212 → 424
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    6. XM_021235590.2 → XP_021091249.1  MHC class II transactivator isoform X1

      UniProtKB/TrEMBL
      A0A3Q0DFR3
      Related
      ENSMAUP00000011223.2, ENSMAUT00000015104.2
      Conserved Domains (4) summary
      cd00116
      Location:861 → 1187
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:1058 → 1085
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:490 → 659
      NACHT; NACHT domain
      cl27975
      Location:197 → 425
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    7. XM_021235591.2 → XP_021091250.1  MHC class II transactivator isoform X2

      UniProtKB/TrEMBL
      A0A3Q0DA55
      Related
      ENSMAUP00000054434.1, ENSMAUT00000070737.1
      Conserved Domains (4) summary
      cd00116
      Location:861 → 1186
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:1058 → 1085
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:490 → 659
      NACHT; NACHT domain
      cl27975
      Location:197 → 425
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    8. XM_021235595.2 → XP_021091254.1  MHC class II transactivator isoform X8

      UniProtKB/TrEMBL
      A0A3Q0DFR8
      Related
      ENSMAUP00000011231.2, ENSMAUT00000015113.2
      Conserved Domains (4) summary
      cd00116
      Location:784 → 1110
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:981 → 1008
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:413 → 582
      NACHT; NACHT domain
      cl27975
      Location:120 → 348
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    9. XM_021235596.2 → XP_021091255.1  MHC class II transactivator isoform X9

      UniProtKB/TrEMBL
      A0A3Q0DA59
      Related
      ENSMAUP00000028743.1, ENSMAUT00000037211.1
      Conserved Domains (4) summary
      cd00116
      Location:760 → 1086
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00034
      Location:957 → 984
      LRR_AMN1; leucine-rich repeat [structural motif]
      pfam05729
      Location:389 → 558
      NACHT; NACHT domain
      cl27975
      Location:96 → 313
      EBV-NA3; Epstein-Barr virus nuclear antigen 3 (EBNA-3)

    10. XM_040748101.1 → XP_040604035.1  MHC class II transactivator isoform X10

      Conserved Domains (2) summary
      PHA03377
      Location:213 → 414
      PHA03377; EBNA-3C; Provisional
      cl39015
      Location:861 → 1061
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.