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    LGI1 leucine rich glioma inactivated 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 477777, updated on 5-Mar-2024

    Summary

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    Gene symbol
    LGI1
    Gene description
    leucine rich glioma inactivated 1
    See related
    Ensembl:ENSCAFG00845020109
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See LGI1 in Genome Data Viewer
    Location:
    chromosome: 28
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 28 NC_051832.1 (8226366..8265262)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 28 NC_006610.4 (8142279..8181152)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 28 NC_049249.1 (8145234..8184124)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 28 NC_049288.1 (7945864..7984726)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 28 NC_049769.1 (7975424..8014295)

    Chromosome 28 - NC_051832.1Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 6C Neighboring gene FRA10A associated CGG repeat 1 Neighboring gene uncharacterized LOC111092958 Neighboring gene uncharacterized LOC111092959 Neighboring gene uncharacterized LOC106557975 Neighboring gene stress-induced-phosphoprotein 1-like Neighboring gene solute carrier family 35 member G1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Characterization and mapping of canine polymorphic markers. Tiret L, et al. Anim Genet, 1999 Dec. PMID 10612254

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    leucine-rich glioma-inactivated protein 1
    Names
    polymorphic marker clone YB07

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051832.1 Reference ROS_Cfam_1.0

      Range
      8226366..8265262
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038439972.1 → XP_038295900.1  leucine-rich glioma-inactivated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0RHM6, A0A8I3P2J1
      Related
      ENSCAFP00845027884.1, ENSCAFT00845035642.1
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:225 → 264
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    2. XM_038439970.1 → XP_038295898.1  leucine-rich glioma-inactivated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JV76, A0A8C0N6D5, A0A8I3PGU1, A0A8I3S1M6
      Related
      ENSCAFP00845027990.1, ENSCAFT00845035775.1
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:510 → 549
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049288.1 Alternate UMICH_Zoey_3.1

      Range
      7945864..7984726
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038514584.1 → XP_038370512.1  leucine-rich glioma-inactivated protein 1 isoform X2

      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:225 → 264
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    2. XM_038514583.1 → XP_038370511.1  leucine-rich glioma-inactivated protein 1 isoform X1

      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:510 → 549
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049769.1 Alternate UNSW_CanFamBas_1.0

      Range
      7975424..8014295
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038642393.1 → XP_038498321.1  leucine-rich glioma-inactivated protein 1 isoform X2

      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:225 → 264
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    2. XM_038642392.1 → XP_038498320.1  leucine-rich glioma-inactivated protein 1 isoform X1

      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:510 → 549
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049249.1 Alternate UU_Cfam_GSD_1.0

      Range
      8145234..8184124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038578229.1 → XP_038434157.1  leucine-rich glioma-inactivated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0RHM6, A0A8I3P2J1
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:225 → 264
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    2. XM_038578228.1 → XP_038434156.1  leucine-rich glioma-inactivated protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8C0JV76, A0A8C0N6D5, A0A8I3PGU1, A0A8I3S1M6
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:510 → 549
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006610.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      8142279..8181152
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_014109031.3 → XP_013964506.1  leucine-rich glioma-inactivated protein 1 isoform X2

      UniProtKB/TrEMBL
      A0A8C0RHM6, A0A8I3P2J1
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:225 → 264
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat

    2. XM_534971.7 → XP_534971.2  leucine-rich glioma-inactivated protein 1 isoform X1

      See identical proteins and their annotated locations for XP_534971.2

      UniProtKB/TrEMBL
      A0A8C0JV76, A0A8C0N6D5, A0A8I3PGU1, A0A8I3S1M6
      Conserved Domains (4) summary
      TIGR00864
      Location:146 → 221
      PCC; polycystin cation channel protein
      sd00031
      Location:71 → 92
      LRR_1; leucine-rich repeat [structural motif]
      pfam03736
      Location:510 → 549
      EPTP; EPTP domain
      pfam13855
      Location:91 → 151
      LRR_8; Leucine rich repeat
    Nucleotide Protein
    Heading Accession and Version

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