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    MSR1 macrophage scavenger receptor 1 [ Canis lupus familiaris (dog) ]

    Gene ID: 482891, updated on 5-Mar-2024

    Summary

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    Official Symbol
    MSR1provided by VGNC
    Official Full Name
    macrophage scavenger receptor 1provided by VGNC
    Primary source
    VGNC:VGNC:43448
    See related
    Ensembl:ENSCAFG00845014323
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    See MSR1 in Genome Data Viewer
    Location:
    chromosome: 16
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 16 NC_051820.1 (41487019..41565417, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 16 NC_006598.4 (39918454..39996751, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 16 NC_049237.1 (40253347..40331889, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 16 NC_049276.1 (39583887..39662157, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 16 NC_049757.1 (40129035..40207399, complement)

    Chromosome 16 - NC_051820.1Genomic Context describing neighboring genes Neighboring gene tumor suppressor candidate 3 Neighboring gene uncharacterized LOC111090176 Neighboring gene annexin A2-like Neighboring gene uncharacterized LOC119869529 Neighboring gene NADPH--cytochrome P450 reductase-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables scavenger receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in receptor-mediated endocytosis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    macrophage scavenger receptor types I and II

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051820.1 Reference ROS_Cfam_1.0

      Range
      41487019..41565417 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038690038.1 → XP_038545966.1  macrophage scavenger receptor types I and II isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGT0, A0A8C0P8W6, A0A8C0Q7U5, A0A8I3NJC9, A0A8I3NVT5
      Related
      ENSCAFP00845020189.1, ENSCAFT00845025627.1
      Conserved Domains (3) summary
      smart00202
      Location:353 → 453
      SR; Scavenger receptor Cys-rich
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    2. XM_038690039.1 → XP_038545967.1  macrophage scavenger receptor types I and II isoform X2

      UniProtKB/TrEMBL
      A0A8C0QC90, A0A8C0RQP7, A0A8I3NVX3, A0A8I3RY28
      Related
      ENSCAFP00845020253.1, ENSCAFT00845025700.1
      Conserved Domains (2) summary
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049276.1 Alternate UMICH_Zoey_3.1

      Range
      39583887..39662157 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038497767.1 → XP_038353695.1  macrophage scavenger receptor types I and II isoform X1

      Conserved Domains (3) summary
      smart00202
      Location:353 → 453
      SR; Scavenger receptor Cys-rich
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    2. XM_038497768.1 → XP_038353696.1  macrophage scavenger receptor types I and II isoform X2

      Conserved Domains (2) summary
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049757.1 Alternate UNSW_CanFamBas_1.0

      Range
      40129035..40207399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038624287.1 → XP_038480215.1  macrophage scavenger receptor types I and II isoform X1

    2. XM_038624288.1 → XP_038480216.1  macrophage scavenger receptor types I and II isoform X2

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049237.1 Alternate UU_Cfam_GSD_1.0

      Range
      40253347..40331889 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038560236.1 → XP_038416164.1  macrophage scavenger receptor types I and II isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGT0, A0A8C0P8W6, A0A8C0Q7U5, A0A8I3NJC9, A0A8I3NVT5
      Conserved Domains (3) summary
      smart00202
      Location:353 → 453
      SR; Scavenger receptor Cys-rich
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    2. XM_038560237.1 → XP_038416165.1  macrophage scavenger receptor types I and II isoform X2

      UniProtKB/TrEMBL
      A0A8C0QC90, A0A8C0RQP7, A0A8I3NVX3, A0A8I3RY28
      Conserved Domains (2) summary
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006598.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      39918454..39996751 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_843168.5 → XP_848261.1  macrophage scavenger receptor types I and II isoform X1

      UniProtKB/TrEMBL
      A0A8C0JGT0, A0A8C0P8W6, A0A8C0Q7U5, A0A8I3NJC9, A0A8I3NVT5
      Conserved Domains (3) summary
      smart00202
      Location:353 → 453
      SR; Scavenger receptor Cys-rich
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor

    2. XM_005629930.4 → XP_005629987.1  macrophage scavenger receptor types I and II isoform X2

      UniProtKB/TrEMBL
      A0A8C0QC90, A0A8C0RQP7, A0A8I3NVX3, A0A8I3RY28
      Conserved Domains (2) summary
      pfam01391
      Location:280 → 337
      Collagen; Collagen triple helix repeat (20 copies)
      pfam03523
      Location:121 → 169
      Macscav_rec; Macrophage scavenger receptor
    Nucleotide Protein
    Heading Accession and Version

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