U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

LOC486445 RIMS-binding protein 3A-like [ Canis lupus familiaris (dog) ]

Gene ID: 486445, updated on 22-Jan-2024

Summary

Go to the top of the page Help
Gene symbol
LOC486445
Gene description
RIMS-binding protein 3A-like
See related
Ensembl:ENSCAFG00845025717
Gene type
protein coding
RefSeq status
MODEL
Organism
Canis lupus familiaris (sub-species: familiaris)
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See LOC486445 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
1
Annotation release Status Assembly Chr Location
106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (32224478..32230006, complement)
106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (30776985..30782513, complement)
106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (30987818..30993345, complement)
106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (30273966..30279493, complement)
106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (29897997..29903525, complement)

Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 191C Neighboring gene HIC ZBTB transcriptional repressor 2 Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene YdjC chitooligosaccharide deacetylase homolog

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fertilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuromuscular synaptic transmission IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatid development IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in manchette IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
RIMS-binding protein 3A-like

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ROS_Cfam_1.0

Genomic

  1. NC_051830.1 Reference ROS_Cfam_1.0

    Range
    32224478..32230006 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038437619.1 → XP_038293547.1  RIMS-binding protein 3A-like

    UniProtKB/TrEMBL
    A0A8C0PEK3, A0A8I3PLP2
    Related
    ENSCAFP00845035605.1, ENSCAFT00845045396.1
    Conserved Domains (4) summary
    cd12014
    Location:840 → 899
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    TIGR02168
    Location:29 → 690
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:1464 → 1525
    SH3; Src Homology 3 domain superfamily
    cl21522
    Location:1002 → 1063
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UMICH_Zoey_3.1

Genomic

  1. NC_049286.1 Alternate UMICH_Zoey_3.1

    Range
    30273966..30279493 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038512484.1 → XP_038368412.1  RIMS-binding protein 3A-like

Alternate UNSW_CanFamBas_1.0

Genomic

  1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

    Range
    29897997..29903525 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038640191.1 → XP_038496119.1  RIMS-binding protein 3A-like

    Conserved Domains (4) summary
    cd12014
    Location:840 → 899
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    TIGR02168
    Location:29 → 690
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    cl17036
    Location:1464 → 1525
    SH3; Src Homology 3 domain superfamily
    cl21522
    Location:1002 → 1063
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

Alternate UU_Cfam_GSD_1.0

Genomic

  1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

    Range
    30987818..30993345 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038575981.1 → XP_038431909.1  RIMS-binding protein 3A-like

    UniProtKB/TrEMBL
    A0A8C0KN48, A0A8C0THB4

Alternate Dog10K_Boxer_Tasha Primary Assembly

Genomic

  1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

    Range
    30776985..30782513 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_543571.6 → XP_543571.3  RIMS-binding protein 3A-like

    UniProtKB/TrEMBL
    A0A8P0SWZ4
    Conserved Domains (6) summary
    cd12014
    Location:840 → 899
    SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
    TIGR02168
    Location:29 → 690
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    pfam00041
    Location:1002 → 1063
    fn3; Fibronectin type III domain
    cd16269
    Location:112 → 123
    GBP_C; coiled coil [structural motif]
    cl17036
    Location:1464 → 1525
    SH3; Src Homology 3 domain superfamily
    cl20817
    Location:34 → 142
    GBP_C; Guanylate-binding protein, C-terminal domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases