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    LOC486445 RIMS-binding protein 3A-like [ Canis lupus familiaris (dog) ]

    Gene ID: 486445, updated on 22-Jan-2024

    Summary

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    Gene symbol
    LOC486445
    Gene description
    RIMS-binding protein 3A-like
    See related
    Ensembl:ENSCAFG00845025717
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
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    Genomic context

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    See LOC486445 in Genome Data Viewer
    Location:
    chromosome: 26
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 26 NC_051830.1 (32224478..32230006, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 26 NC_006608.4 (30776985..30782513, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 26 NC_049247.1 (30987818..30993345, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 26 NC_049286.1 (30273966..30279493, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 26 NC_049767.1 (29897997..29903525, complement)

    Chromosome 26 - NC_051830.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 191C Neighboring gene HIC ZBTB transcriptional repressor 2 Neighboring gene ubiquitin conjugating enzyme E2 L3 Neighboring gene YdjC chitooligosaccharide deacetylase homolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fertilization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in neuromuscular synaptic transmission IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in spermatid development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in manchette IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    RIMS-binding protein 3A-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051830.1 Reference ROS_Cfam_1.0

      Range
      32224478..32230006 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038437619.1 → XP_038293547.1  RIMS-binding protein 3A-like

      UniProtKB/TrEMBL
      A0A8C0PEK3, A0A8I3PLP2
      Related
      ENSCAFP00845035605.1, ENSCAFT00845045396.1
      Conserved Domains (4) summary
      cd12014
      Location:840 → 899
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      TIGR02168
      Location:29 → 690
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl17036
      Location:1464 → 1525
      SH3; Src Homology 3 domain superfamily
      cl21522
      Location:1002 → 1063
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049286.1 Alternate UMICH_Zoey_3.1

      Range
      30273966..30279493 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038512484.1 → XP_038368412.1  RIMS-binding protein 3A-like

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049767.1 Alternate UNSW_CanFamBas_1.0

      Range
      29897997..29903525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038640191.1 → XP_038496119.1  RIMS-binding protein 3A-like

      Conserved Domains (4) summary
      cd12014
      Location:840 → 899
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      TIGR02168
      Location:29 → 690
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      cl17036
      Location:1464 → 1525
      SH3; Src Homology 3 domain superfamily
      cl21522
      Location:1002 → 1063
      FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049247.1 Alternate UU_Cfam_GSD_1.0

      Range
      30987818..30993345 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038575981.1 → XP_038431909.1  RIMS-binding protein 3A-like

      UniProtKB/TrEMBL
      A0A8C0KN48, A0A8C0THB4

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006608.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      30776985..30782513 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_543571.6 → XP_543571.3  RIMS-binding protein 3A-like

      UniProtKB/TrEMBL
      A0A8P0SWZ4
      Conserved Domains (6) summary
      cd12014
      Location:840 → 899
      SH3_RIM-BP_1; First Src homology 3 domain of Rab3-interacting molecules (RIMs) binding proteins
      TIGR02168
      Location:29 → 690
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type
      pfam00041
      Location:1002 → 1063
      fn3; Fibronectin type III domain
      cd16269
      Location:112 → 123
      GBP_C; coiled coil [structural motif]
      cl17036
      Location:1464 → 1525
      SH3; Src Homology 3 domain superfamily
      cl20817
      Location:34 → 142
      GBP_C; Guanylate-binding protein, C-terminal domain
    Nucleotide Protein
    Heading Accession and Version

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