Submitted SNP(ss) Details: ss14873603

Submitted SNP(ss) Details: ss14873603

Submitter
Handle	PERLEGEN
Submitter SNP ID	PS00512723
RefSNP(rs#)	rs10487118
Submitted Batch ID	08-28-2003
Submitted Date	Nov 24, 2003
Publication Cited	11721056
First entry to dbSNP	Nov 13 2003 12:00:00:000AM

Resource Links
GenBank Accession	NC_000007.7
Submitted Gene Name	N.D
Submitted Gene ID	N.D.
Submitted SNP Synonyms	N.D
Submitted linkout	N.D

Assay
Species	Homo sapiens
Molecular Type	Genomic
Method	WAFER_HYB
Ascertainment Samplesize	21
Population	NCBI\|NIHPDR

Allele
Observed Allele	A/C
Ancestral Allele	N.D.
Allele Origin	N/A
SNP Class	SNV
CpG Code	Unknown

Validation
Validation Status
HWE Goodness of Fit	not applicable

Variation
Frequency Submission	population count: 75
Genotype Summary	population count: 91
Genotype Submission	N.D.
Haplotype	N.D.

Comment
position 89733738

Fasta sequence (Legend)

 TGCAAGTATC TCTAGTTTTA CTGAGTCCTC TGGGAGCTCT AGAAACCCTA GGACTTTCAT
 AATGAGGGAT ACATTTTTGG AGTTATTTTT TTGCTTGGGA
 M
 GATTTTGGTT CTATTAAATT TTTTTTCTAT TTTCACTTGC ACTTTTTTTT CACTGAAAAC
 CAATACAATT TTTTCCAACT AAATCGGGAG CATTGGTAAA

Submitted Frequency for ss14873603

Population ID -Class	Sample (2n)	Genotype Freq.	Submission Batch	Submitter
YRI - WEST AFRICA	120	A/A=0.98333299 A/C=0.01666700 C/C=0.00000000	PASNP_2	PASNPI
TW-HB - EAST ASIA	64	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-JI - EAST ASIA	62	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-GA - EAST ASIA	60	A/A=0.96666700 A/C=0.03333300 C/C=0.00000000	PASNP_2	PASNPI
IN-DR - CENTRAL ASIA	48	A/A=0.58333302 A/C=0.33333299 C/C=0.04166700 N/N=0.04166700	PASNP_2	PASNPI
PI-IR - PACIFIC	18	A/A=0.77777803 N/N=0.22222200 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-TK - PACIFIC	36	A/A=0.94444400 A/C=0.05555600 C/C=0.00000000	PASNP_2	PASNPI
IN-IL - CENTRAL ASIA	30	A/A=0.86666697 A/C=0.13333300 C/C=0.00000000	PASNP_2	PASNPI
TH-PL - PACIFIC	36	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
PI-MW - PACIFIC	38	A/A=0.78947401 N/N=0.15789500 A/C=0.05263200 C/C=0.00000000	PASNP_2	PASNPI
ID-KR - PACIFIC	34	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-HM - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
KR-KR - EAST ASIA	180	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-MA - PACIFIC	36	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
IN-NL - CENTRAL ASIA	30	A/A=0.86666697 A/C=0.13333300 C/C=0.00000000	PASNP_2	PASNPI
TH-PP - PACIFIC	36	A/A=0.88888901 A/C=0.11111100 C/C=0.00000000	PASNP_2	PASNPI
IN-EL - CENTRAL ASIA	32	A/A=0.87500000 A/C=0.12500000 C/C=0.00000000	PASNP_2	PASNPI
SG-ML - PACIFIC	60	A/A=0.96666700 A/C=0.03333300 C/C=0.00000000	PASNP_2	PASNPI
TH-LW - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-TY - PACIFIC	36	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
IN-WL - CENTRAL ASIA	28	A/A=0.57142901 A/C=0.42857099 C/C=0.00000000	PASNP_2	PASNPI
ID-ML - PACIFIC	24	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-CC - EAST ASIA	52	A/A=0.96153802 A/C=0.03846200 C/C=0.00000000	PASNP_2	PASNPI
IN-SP - CENTRAL ASIA	46	A/A=0.78260899 A/C=0.21739100 C/C=0.00000000	PASNP_2	PASNPI
SG-ID - PACIFIC	60	A/A=0.63333303 A/C=0.33333299 C/C=0.03333300	PASNP_2	PASNPI
PI-AE - PACIFIC	16	A/A=0.75000000 A/C=0.12500000 N/N=0.12500000 C/C=0.00000000	PASNP_2	PASNPI
ID-DY - PACIFIC	24	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-JA - PACIFIC	68	A/A=0.94117600 A/C=0.05882400 C/C=0.00000000	PASNP_2	PASNPI
AX-ME - PACIFIC	10	A/A=0.60000002 A/C=0.40000001 C/C=0.00000000	PASNP_2	PASNPI
IN-TB - CENTRAL ASIA	46	A/A=0.86956501 A/C=0.13043500 C/C=0.00000000	PASNP_2	PASNPI
ID-LE - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
SG-CH - PACIFIC	60	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-MT - PACIFIC	30	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
JP-ML - EAST ASIA	142	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-KA - PACIFIC	40	A/A=0.94999999 A/C=0.05000000 C/C=0.00000000	PASNP_2	PASNPI
ID-SO - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
PI-UB - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
AX-AT - EAST ASIA	20	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-SH - EAST ASIA	42	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
MY-MN - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
AX-AM - EAST ASIA	20	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
PI-UI - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CEU - EUROPE	120	A/A=0.51666701 A/C=0.43333301 C/C=0.05000000	PASNP_2	PASNPI
ID-JV - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-TR - PACIFIC	40	A/A=0.94999999 A/C=0.05000000 C/C=0.00000000	PASNP_2	PASNPI
IN-WI - CENTRAL ASIA	50	A/A=0.83999997 A/C=0.12000000 C/C=0.04000000	PASNP_2	PASNPI
PI-MA - PACIFIC	36	A/A=0.94444400 A/C=0.05555600 C/C=0.00000000	PASNP_2	PASNPI
TW-HA - EAST ASIA	96	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-TL - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-RA - PACIFIC	34	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-UG - EAST ASIA	52	A/A=0.73076898 A/C=0.26923099 C/C=0.00000000	PASNP_2	PASNPI
MY-KS - PACIFIC	60	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
IN-NI - CENTRAL ASIA	40	A/A=0.94999999 A/C=0.05000000 C/C=0.00000000	PASNP_2	PASNPI
MY-BD - PACIFIC	100	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
MY-KN - PACIFIC	36	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-SB - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-YA - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-MO - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-SU - PACIFIC	50	A/A=0.95999998 A/C=0.04000000 C/C=0.00000000	PASNP_2	PASNPI
JP-RK - EAST ASIA	98	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-JN - EAST ASIA	58	A/A=0.96551698 A/C=0.03448300 C/C=0.00000000	PASNP_2	PASNPI
PI-AT - PACIFIC	46	A/A=0.82608700 N/N=0.17391300 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
ID-LA - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
PI-UN - PACIFIC	38	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-WA - EAST ASIA	112	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
MY-TM - PACIFIC	98	A/A=0.97959203 A/C=0.02040800 C/C=0.00000000	PASNP_2	PASNPI
ID-AL - PACIFIC	38	A/A=0.94736803 A/C=0.05263200 C/C=0.00000000	PASNP_2	PASNPI
MY-JH - PACIFIC	100	A/A=0.88000000 A/C=0.12000000 C/C=0.00000000	PASNP_2	PASNPI
ID-TB - PACIFIC	40	A/A=0.94999999 A/C=0.05000000 C/C=0.00000000	PASNP_2	PASNPI
JPT - EAST ASIA	88	A/A=0.95454502 N/N=0.04545500 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CN-HM - EAST ASIA	52	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
TH-TU - PACIFIC	40	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
CHB - EAST ASIA	90	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI
PI-AG - PACIFIC	16	A/A=0.50000000 N/N=0.37500000 A/C=0.12500000 C/C=0.00000000	PASNP_2	PASNPI
TH-TN - PACIFIC	36	A/A=1.00000000 A/C=0.00000000 C/C=0.00000000	PASNP_2	PASNPI

dbSNP summary of Genotypes for ss14873603

Population ID -Class	Total Sample (2N)	Founder (2N)	Major Allele Freq.	Minor Allele Freq.	Genotype Freq.	HWE Goodness of Fit	Data Source
Caucasian	24	24	A=0.70833331	C=0.29166666	A/A=0.50000000 A/C=0.41666666 C/C=0.08333334	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
PDpanel	46	46	A=0.93478262	C=0.06521739	A/A=0.86956519 A/C=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
HapMap-CEU	226	226	A=0.76548672	C=0.23451327	A/A=0.58407080 A/C=0.36283186 C/C=0.05309734	Pr(chiSq=0.013,df=1) =1.000	Genotype Freq.
HapMap-YRI	226	282	A=0.98230088	C=0.01769911	A/A=0.96453899 A/C=0.03546099	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
HAPMAP-ASW	98	106	A=0.92857140	C=0.07142857	A/A=0.83018869 A/C=0.16981132	Pr(chiSq=0.615,df=1) =0.439	Genotype Freq.
HAPMAP-CHD	170	170	A=0.99411762	C=0.00588235	A/A=0.98823529 A/C=0.01176471	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
HAPMAP-GIH	176	176	A=0.82954544	C=0.17045455	A/A=0.70454544 A/C=0.25000000 C/C=0.04545455	Pr(chiSq=1.184,df=1) =0.294	Genotype Freq.
HAPMAP-LWK	180	180	A=0.96111113	C=0.03888889	A/A=0.93333334 A/C=0.05555556 C/C=0.01111111	Pr(chiSq=5.936,df=1) =0.020	Genotype Freq.
HAPMAP-MEX	100	154	A=0.87000000	C=0.13000000	A/A=0.75324672 A/C=0.24675325	Pr(chiSq=0.145,df=1) =0.752	Genotype Freq.
HAPMAP-MKK	286	286	A=0.86013985	C=0.13986014	A/A=0.72727275 A/C=0.26573426 C/C=0.00699301	Pr(chiSq=1.561,df=1) =0.251	Genotype Freq.
HAPMAP-TSI	176	176	A=0.74431819	C=0.25568181	A/A=0.54545456 A/C=0.39772728 C/C=0.05681818	Pr(chiSq=0.178,df=1) =0.752	Genotype Freq.
CEU - EUROPE	120	120	A=0.73333335	C=0.26666668	A/A=0.51666665 A/C=0.43333334 C/C=0.05000000	Pr(chiSq=0.699,df=1) =0.439	Genotype Freq.
CN-CC - EAST ASIA	52	52	A=0.98076922	C=0.01923077	A/A=0.96153843 A/C=0.03846154	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
CN-GA - EAST ASIA	60	60	A=0.98333335	C=0.01666667	A/A=0.96666664 A/C=0.03333334	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
CN-JN - EAST ASIA	58	58	A=0.98275864	C=0.01724138	A/A=0.96551722 A/C=0.03448276	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
CN-UG - EAST ASIA	52	52	A=0.86538464	C=0.13461539	A/A=0.73076922 A/C=0.26923078	Pr(chiSq=0.158,df=1) =0.752	Genotype Freq.
ID-AL - PACIFIC	38	38	A=0.97368419	C=0.02631579	A/A=0.94736844 A/C=0.05263158	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
ID-JA - PACIFIC	68	68	A=0.97058821	C=0.02941176	A/A=0.94117647 A/C=0.05882353	Pr(chiSq=0.002,df=1) =1.000	Genotype Freq.
ID-SU - PACIFIC	50	50	A=0.98000002	C=0.02000000	A/A=0.95999998 A/C=0.04000000	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
ID-TB - PACIFIC	40	40	A=0.97500002	C=0.02500000	A/A=0.94999999 A/C=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
ID-TR - PACIFIC	40	40	A=0.97500002	C=0.02500000	A/A=0.94999999 A/C=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
IN-DR - CENTRAL ASIA	46	46	A=0.78260869	C=0.21739130	A/A=0.60869563 A/C=0.34782609 C/C=0.04347826	Pr(chiSq=0.011,df=1) =1.000	Genotype Freq.
IN-EL - CENTRAL ASIA	32	32	A=0.93750000	C=0.06250000	A/A=0.87500000 A/C=0.12500000	Pr(chiSq=0.009,df=1) =1.000	Genotype Freq.
IN-IL - CENTRAL ASIA	30	30	A=0.93333334	C=0.06666667	A/A=0.86666667 A/C=0.13333334	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
IN-NI - CENTRAL ASIA	40	40	A=0.97500002	C=0.02500000	A/A=0.94999999 A/C=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
IN-NL - CENTRAL ASIA	30	30	A=0.93333334	C=0.06666667	A/A=0.86666667 A/C=0.13333334	Pr(chiSq=0.010,df=1) =1.000	Genotype Freq.
IN-SP - CENTRAL ASIA	46	46	A=0.89130437	C=0.10869565	A/A=0.78260869 A/C=0.21739130	Pr(chiSq=0.070,df=1) =1.000	Genotype Freq.
IN-TB - CENTRAL ASIA	46	46	A=0.93478262	C=0.06521739	A/A=0.86956519 A/C=0.13043478	Pr(chiSq=0.014,df=1) =1.000	Genotype Freq.
IN-WI - CENTRAL ASIA	50	50	A=0.89999998	C=0.10000000	A/A=0.83999997 A/C=0.12000000 C/C=0.04000000	Pr(chiSq=2.778,df=1) =0.100	Genotype Freq.
IN-WL - CENTRAL ASIA	28	28	A=0.78571427	C=0.21428572	A/A=0.57142860 A/C=0.42857143	Pr(chiSq=0.398,df=1) =0.584	Genotype Freq.
MY-JH - PACIFIC	100	100	A=0.94000000	C=0.06000000	A/A=0.88000000 A/C=0.12000000	Pr(chiSq=0.024,df=1) =1.000	Genotype Freq.
MY-TM - PACIFIC	98	98	A=0.98979592	C=0.01020408	A/A=0.97959185 A/C=0.02040816	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
PI-MA - PACIFIC	36	36	A=0.97222221	C=0.02777778	A/A=0.94444442 A/C=0.05555556	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
PI-MW - PACIFIC	32	32	A=0.96875000	C=0.03125000	A/A=0.93750000 A/C=0.06250000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
SG-ID - PACIFIC	60	60	A=0.80000001	C=0.20000000	A/A=0.63333333 A/C=0.33333334 C/C=0.03333334	Pr(chiSq=0.052,df=1) =1.000	Genotype Freq.
SG-ML - PACIFIC	60	60	A=0.98333335	C=0.01666667	A/A=0.96666664 A/C=0.03333334	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.
TH-KA - PACIFIC	40	40	A=0.97500002	C=0.02500000	A/A=0.94999999 A/C=0.05000000	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
TH-PP - PACIFIC	36	36	A=0.94444442	C=0.05555556	A/A=0.88888890 A/C=0.11111111	Pr(chiSq=0.007,df=1) =1.000	Genotype Freq.
TH-TK - PACIFIC	36	36	A=0.97222221	C=0.02777778	A/A=0.94444442 A/C=0.05555556	Pr(chiSq=0.001,df=1) =1.000	Genotype Freq.
YRI - WEST AFRICA	120	120	A=0.99166667	C=0.00833333	A/A=0.98333335 A/C=0.01666667	Pr(chiSq=0.000,df=1) =1.000	Genotype Freq.

Submitted individual genotype for ss14873603

There is no individual genotype data for ss14873603.

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