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Platform GPL16933 Query DataSets for GPL16933
Status Public on Mar 29, 2013
Title [ZebGene-1_0-st] Zebrafish Gene 1.0 ST Array [transcript (gene) version]
Technology type in situ oligonucleotide
Distribution commercial
Organism Danio rerio
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
Description Affymetrix submissions are typically submitted to GEO using the GEOarchive method described at http://0-www-ncbi-nlm-nih-gov.brum.beds.ac.uk/projects/geo/info/geo_affy.html

Jan 29, 2013: annotation table updated with netaffx build 33
 
Web link http://www.affymetrix.com/support/technical/byproduct.affx?product=modelorg_1_1_array
http://www.affymetrix.com/support/technical/libraryfilesmain.affx
Submission date Mar 29, 2013
Last update date May 07, 2013
Organization Affymetrix, Inc.
E-mail(s) geo@ncbi.nlm.nih.gov, support@affymetrix.com
Phone 888-362-2447
URL http://www.affymetrix.com/index.affx
Street address
City Santa Clara
State/province CA
ZIP/Postal code 95051
Country USA
 
Samples (382) GSM1347323, GSM1347324, GSM1347325, GSM1347326, GSM1347327, GSM1347328 
Series (30)
GSE55853 Dynamic gene expression by putative hair-cell progenitors during regeneration in the zebrafish lateral line
GSE56015 Runx+ HSPC, kdrl+ endothelial, and negative cells sorted from DMSO- or Lycorine-treated 3 dpf zebrafish embryos
GSE58944 Gene expression data from myelomonocytes and whole kidney marrows in zebrafish adult kidney after deletion of miR-142-3p

Data table header descriptions
ID transcript_cluster_id
seqname chromosome number
strand (+|-)
start (integer). Coordinates are standard 1-based (length=stop-start+1).
stop (integer). Coordinates are standard 1-based (length=stop-start+1).
total_probes Total number of probes contained by this transcript cluster.
gene_assignment Gene name(s) for each assigned mRNA for mRNAs that corresponds to known genes. (multipart)
mrna_assignment Public mRNAs that should be detected by this probe set based on sequence alignment determined at the time of the current NetAffx annotation update. (multipart).
swissprot
unigene
GO_biological_process
GO_cellular_component
GO_molecular_function
pathway
protein_domains
crosshyb_type
category Array design category of the transcript cluster
SPOT_ID genomic location of the transcript cluster in the version of the genome assembly used at annotation time. Coordinates are standard 1-based (length=stop-start+1).

Data table
ID seqname strand start stop total_probes gene_assignment mrna_assignment swissprot unigene GO_biological_process GO_cellular_component GO_molecular_function pathway protein_domains crosshyb_type category SPOT_ID
12953446 chr1 - 10005990 10006759 16 --- --- --- --- --- --- --- --- --- --- --- chr1(-):10005990-10006759
12953448 chr1 - 10008204 10258954 72 ENSDART00000009886 // dmd // dystrophin // --- // 83773 /// NM_131785 // dmd // dystrophin // --- // 83773 /// BC095190 // dmd // dystrophin // --- // 83773 /// ENSDART00000102903 // dmd // dystrophin // --- // 83773 /// AF339031 // dmd // dystrophin // --- // 83773 /// AY162403 // dmd // dystrophin // --- // 83773 /// ENSDART00000144095 // dmd // dystrophin // --- // 83773 /// AF339032 // dmd // dystrophin // --- // 83773 /// ENSDART00000138275 // dmd // dystrophin // --- // 83773 /// ENSDART00000102923 // dmd // dystrophin // --- // 83773 /// ENSDART00000135563 // dmd // dystrophin // --- // 83773 /// ENSDART00000131744 // dmd // dystrophin // --- // 83773 /// ENSDART00000007013 // dmd // dystrophin // --- // 83773 /// ENSDART00000126518 // dmd // dystrophin // --- // 83773 /// ENSDART00000141052 // dmd // dystrophin // --- // 83773 /// ENSDART00000148305 // dmd // dystrophin // --- // 83773 ENSDART00000009886 // ENSEMBL // cdna:novel chromosome:Zv9:1:10008204:10068890:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 17 // 12 // 12 // 0 /// NM_131785 // RefSeq // Danio rerio dystrophin (dmd), mRNA. // chr1 // 100 // 14 // 10 // 10 // 0 /// BC095190 // GenBank // Danio rerio dystrophin, mRNA (cDNA clone MGC:110165 IMAGE:7290297), complete cds. // chr1 // 100 // 14 // 10 // 10 // 0 /// ENSDART00000102903 // ENSEMBL // cdna:known chromosome:Zv9:1:10008302:10258954:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 90 // 65 // 65 // 0 /// AF339031 // GenBank // Danio rerio dystrophin (dmd) mRNA, partial cds, alternatively spliced. // chr1 // 100 // 29 // 21 // 21 // 0 /// AY162403 // GenBank // Danio rerio dystrophin (dmd) mRNA, partial cds. // chr1 // 100 // 11 // 8 // 8 // 0 /// ENSDART00000144095 // ENSEMBL // cdna:known chromosome:Zv9:1:10076873:10087437:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 100 // 10 // 7 // 7 // 0 /// AF339032 // GenBank // Danio rerio dystrophin variant Dp71 (dmd) mRNA, partial cds, alternatively spliced. // chr1 // 100 // 8 // 6 // 6 // 0 /// ENSDART00000138275 // ENSEMBL // cdna:known chromosome:Zv9:1:10008211:10033502:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 100 // 7 // 5 // 5 // 0 /// ENSDART00000102923 // ENSEMBL // cdna:known chromosome:Zv9:1:10084617:10092172:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 100 // 7 // 5 // 5 // 0 /// ENSDART00000135563 // ENSEMBL // cdna:known chromosome:Zv9:1:10008211:10024929:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:processed_transcript // chr1 // 100 // 6 // 4 // 4 // 0 /// ENSDART00000131744 // ENSEMBL // cdna:known chromosome:Zv9:1:10056568:10068889:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:retained_intron // chr1 // 100 // 6 // 4 // 4 // 0 /// ENSDART00000007013 // ENSEMBL // cdna:novel chromosome:Zv9:1:10008204:10098074:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 29 // 21 // 21 // 0 /// ENSDART00000126518 // ENSEMBL // cdna:novel chromosome:Zv9:1:10036866:10068820:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 8 // 6 // 6 // 0 /// ENSDART00000141052 // ENSEMBL // cdna:novel chromosome:Zv9:1:10008302:10031304:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 4 // 3 // 3 // 0 /// ENSDART00000148305 // ENSEMBL // cdna:novel chromosome:Zv9:1:10009847:10024899:-1 gene:ENSDARG00000008487 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 4 // 3 // 3 // 0 /// GENSCAN00000008933 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10008302:10185493:-1 transcript_biotype:protein_coding // chr1 // 100 // 75 // 54 // 54 // 0 /// GENSCAN00000008936 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10192482:10290582:-1 transcript_biotype:protein_coding // chr1 // 100 // 8 // 6 // 6 // 0 BC095190 // Q503T6 /// AF339031 // Q90ZT1 /// AY162403 // Q6YBR7 /// AF339032 // Q90ZT0 --- ENSDART00000009886 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000009886 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000009886 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000009886 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000009886 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// NM_131785 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// NM_131785 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// NM_131785 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// NM_131785 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// NM_131785 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// BC095190 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// BC095190 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// BC095190 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// BC095190 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// BC095190 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000102903 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000102903 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000102903 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000102903 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000102903 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// AF339031 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// AF339031 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// AF339031 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// AF339031 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// AF339031 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// AY162403 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// AY162403 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// AY162403 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// AY162403 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// AY162403 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000144095 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000144095 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000144095 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000144095 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000144095 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// AF339032 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// AF339032 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// AF339032 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// AF339032 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// AF339032 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000138275 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000138275 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000138275 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000138275 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000138275 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000102923 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000102923 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000102923 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000102923 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000102923 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000135563 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000135563 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000135563 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000135563 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000135563 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000131744 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000131744 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000131744 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000131744 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000131744 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000007013 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000007013 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000007013 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000007013 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000007013 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000126518 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000126518 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000126518 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000126518 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000126518 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000141052 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000141052 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000141052 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000141052 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000141052 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype /// ENSDART00000148305 // GO:0007519 // skeletal muscle tissue development // inferred from mutant phenotype /// ENSDART00000148305 // GO:0016203 // muscle attachment // inferred from mutant phenotype /// ENSDART00000148305 // GO:0045214 // sarcomere organization // inferred from mutant phenotype /// ENSDART00000148305 // GO:0048741 // skeletal muscle fiber development // inferred from mutant phenotype /// ENSDART00000148305 // GO:0055002 // striated muscle cell development // inferred from mutant phenotype ENSDART00000009886 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000009886 // GO:0042383 // sarcolemma // inferred from direct assay /// NM_131785 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// NM_131785 // GO:0042383 // sarcolemma // inferred from direct assay /// BC095190 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// BC095190 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000102903 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000102903 // GO:0042383 // sarcolemma // inferred from direct assay /// AF339031 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// AF339031 // GO:0042383 // sarcolemma // inferred from direct assay /// AY162403 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// AY162403 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000144095 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000144095 // GO:0042383 // sarcolemma // inferred from direct assay /// AF339032 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// AF339032 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000138275 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000138275 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000102923 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000102923 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000135563 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000135563 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000131744 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000131744 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000007013 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000007013 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000126518 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000126518 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000141052 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000141052 // GO:0042383 // sarcolemma // inferred from direct assay /// ENSDART00000148305 // GO:0016010 // dystrophin-associated glycoprotein complex // non-traceable author statement /// ENSDART00000148305 // GO:0042383 // sarcolemma // inferred from direct assay ENSDART00000009886 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000009886 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// NM_131785 // GO:0003779 // actin binding // inferred from electronic annotation /// NM_131785 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// BC095190 // GO:0003779 // actin binding // inferred from electronic annotation /// BC095190 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000102903 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000102903 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AF339031 // GO:0003779 // actin binding // inferred from electronic annotation /// AF339031 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AY162403 // GO:0003779 // actin binding // inferred from electronic annotation /// AY162403 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000144095 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000144095 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// AF339032 // GO:0003779 // actin binding // inferred from electronic annotation /// AF339032 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000138275 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000138275 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000102923 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000102923 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000135563 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000135563 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000131744 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000131744 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000007013 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000007013 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000126518 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000126518 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000141052 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000141052 // GO:0008270 // zinc ion binding // inferred from electronic annotation /// ENSDART00000148305 // GO:0003779 // actin binding // inferred from electronic annotation /// ENSDART00000148305 // GO:0008270 // zinc ion binding // inferred from electronic annotation --- ENSDART00000009886 // Pfam // IPR000433 // Zinc finger, ZZ-type /// ENSDART00000009886 // Pfam // IPR015153 // EF-hand domain, type 1 /// ENSDART00000009886 // Pfam // IPR015154 // EF-hand domain, type 2 /// ENSDART00000102903 // Pfam // IPR000433 // Zinc finger, ZZ-type /// ENSDART00000102903 // Pfam // IPR001202 // WW/Rsp5/WWP /// ENSDART00000102903 // Pfam // IPR001715 // Calponin homology domain /// ENSDART00000102903 // Pfam // IPR002017 // Spectrin repeat /// ENSDART00000102903 // Pfam // IPR015153 // EF-hand domain, type 1 /// ENSDART00000102903 // Pfam // IPR015154 // EF-hand domain, type 2 /// ENSDART00000007013 // Pfam // IPR000433 // Zinc finger, ZZ-type /// ENSDART00000007013 // Pfam // IPR001202 // WW/Rsp5/WWP /// ENSDART00000007013 // Pfam // IPR002017 // Spectrin repeat /// ENSDART00000007013 // Pfam // IPR015153 // EF-hand domain, type 1 /// ENSDART00000007013 // Pfam // IPR015154 // EF-hand domain, type 2 /// ENSDART00000126518 // Pfam // IPR000433 // Zinc finger, ZZ-type /// ENSDART00000126518 // Pfam // IPR015153 // EF-hand domain, type 1 /// ENSDART00000126518 // Pfam // IPR015154 // EF-hand domain, type 2 --- main chr1(-):10008204-10258954
12952273 chr1 - 100215 100692 12 --- --- --- --- --- --- --- --- --- --- --- chr1(-):100215-100692
12952565 chr1 - 1022223 1023093 20 XM_002666980 // LOC100332351 // uncharacterized LOC100332351 // --- // 100332351 XM_002666980 // RefSeq // PREDICTED: Danio rerio hypothetical protein LOC100332351 (LOC100332351), mRNA. // chr1 // 100 // 35 // 7 // 7 // 0 --- --- --- --- --- --- --- --- main chr1(-):1022223-1023093
12952568 chr1 - 1023114 1031869 17 XM_002666980 // LOC100332351 // uncharacterized LOC100332351 // --- // 100332351 XM_002666980 // RefSeq // PREDICTED: Danio rerio hypothetical protein LOC100332351 (LOC100332351), mRNA. // chr1 // 100 // 100 // 19 // 19 // 0 /// GENSCAN00000016918 // ENSEMBL // cdna:genscan chromosome:Zv9:1:989727:1029302:-1 transcript_biotype:protein_coding // chr1 // 100 // 88 // 15 // 15 // 0 --- --- --- --- --- --- --- --- main chr1(-):1023114-1031869
12953523 chr1 - 10270507 10290582 32 BC092163 // casc5 // cancer susceptibility candidate 5 // --- // 327226 BC092163 // GenBank // Danio rerio wu:fd18f09, mRNA (cDNA clone IMAGE:7145448), partial cds. // chr1 // 91 // 72 // 21 // 23 // 0 BC092163 // Q56A53 --- --- --- --- --- --- --- main chr1(-):10270507-10290582
12953545 chr1 - 10300970 10301476 20 --- --- --- --- --- --- --- --- --- --- --- chr1(-):10300970-10301476
12953548 chr1 - 10308297 10556009 35 ENSDART00000141238 // zgc:171522 // zgc:171522 // --- // 555553 /// XM_678102 // zgc:171522 // zgc:171522 // --- // 555553 /// ENSDART00000091205 // zgc:171522 // zgc:171522 // --- // 555553 /// ENSDART00000144164 // zgc:171522 // zgc:171522 // --- // 555553 ENSDART00000141238 // ENSEMBL // cdna:novel chromosome:Zv9:1:10308297:10556009:-1 gene:ENSDARG00000062854 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 94 // 33 // 33 // 0 /// XM_678102 // RefSeq // PREDICTED: Danio rerio zgc:171522 (zgc:171522), mRNA. // chr1 // 100 // 94 // 33 // 33 // 0 /// ENSDART00000091205 // ENSEMBL // cdna:known chromosome:Zv9:1:10308653:10556008:-1 gene:ENSDARG00000062854 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 94 // 33 // 33 // 0 /// ENSDART00000144164 // ENSEMBL // cdna:putative chromosome:Zv9:1:10523585:10556007:-1 gene:ENSDARG00000062854 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 9 // 3 // 3 // 0 /// GENSCAN00000008909 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10308653:10471754:-1 transcript_biotype:protein_coding // chr1 // 100 // 80 // 28 // 28 // 0 --- --- ENSDART00000141238 // GO:0008150 // biological_process // no biological data available /// XM_678102 // GO:0008150 // biological_process // no biological data available /// ENSDART00000091205 // GO:0008150 // biological_process // no biological data available /// ENSDART00000144164 // GO:0008150 // biological_process // no biological data available ENSDART00000141238 // GO:0005575 // cellular_component // no biological data available /// XM_678102 // GO:0005575 // cellular_component // no biological data available /// ENSDART00000091205 // GO:0005575 // cellular_component // no biological data available /// ENSDART00000144164 // GO:0005575 // cellular_component // no biological data available ENSDART00000141238 // GO:0003674 // molecular_function // no biological data available /// XM_678102 // GO:0003674 // molecular_function // no biological data available /// ENSDART00000091205 // GO:0003674 // molecular_function // no biological data available /// ENSDART00000144164 // GO:0003674 // molecular_function // no biological data available --- ENSDART00000141238 // Pfam // IPR003961 // Fibronectin, type III /// ENSDART00000141238 // Pfam // IPR013098 // Immunoglobulin I-set /// ENSDART00000141238 // Pfam // IPR013106 // Immunoglobulin V-set /// ENSDART00000141238 // Pfam // IPR013151 // Immunoglobulin /// ENSDART00000091205 // Pfam // IPR003961 // Fibronectin, type III /// ENSDART00000091205 // Pfam // IPR013098 // Immunoglobulin I-set /// ENSDART00000091205 // Pfam // IPR013106 // Immunoglobulin V-set /// ENSDART00000091205 // Pfam // IPR013151 // Immunoglobulin /// ENSDART00000144164 // Pfam // IPR013098 // Immunoglobulin I-set /// ENSDART00000144164 // Pfam // IPR013151 // Immunoglobulin --- main chr1(-):10308297-10556009
12952574 chr1 - 1045570 1046991 8 --- --- --- --- --- --- --- --- --- --- --- chr1(-):1045570-1046991
12952580 chr1 - 1061242 1061700 18 --- --- --- --- --- --- --- --- --- --- --- chr1(-):1061242-1061700
12953586 chr1 - 10776921 10777952 16 XM_001338431 // LOC798013 // carbohydrate sulfotransferase 12-like // --- // 798013 /// ENSDART00000140725 // LOC798013 // carbohydrate sulfotransferase 12-like // --- // 798013 XM_001338431 // RefSeq // PREDICTED: Danio rerio carbohydrate sulfotransferase 12-like (LOC798013), mRNA. // chr1 // 100 // 100 // 17 // 17 // 0 /// ENSDART00000140725 // ENSEMBL // cdna:novel chromosome:Zv9:1:10776921:10777952:-1 gene:ENSDARG00000092242 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 17 // 17 // 0 /// GENSCAN00000008929 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10776921:10777952:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 17 // 17 // 0 --- --- --- --- --- --- ENSDART00000140725 // Pfam // IPR005331 // Sulfotransferase --- main chr1(-):10776921-10777952
12953588 chr1 - 10787133 10788026 6 XM_003197630 // LOC100538167 // carbohydrate sulfotransferase 12-like // --- // 100538167 /// ENSDART00000136093 // LOC100538167 // carbohydrate sulfotransferase 12-like // --- // 100538167 XM_003197630 // RefSeq // PREDICTED: Danio rerio carbohydrate sulfotransferase 12-like (LOC100538167), mRNA. // chr1 // 100 // 100 // 8 // 8 // 0 /// ENSDART00000136093 // ENSEMBL // cdna:novel chromosome:Zv9:1:10787133:10788026:-1 gene:ENSDARG00000092200 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 /// GENSCAN00000008924 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10787133:10788179:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 8 // 8 // 0 --- --- --- --- --- --- ENSDART00000136093 // Pfam // IPR005331 // Sulfotransferase --- main chr1(-):10787133-10788026
12953590 chr1 - 10796396 10797265 7 ENSDART00000131668 // LOC797712 // carbohydrate sulfotransferase 12-like // --- // 797712 ENSDART00000131668 // ENSEMBL // cdna:novel chromosome:Zv9:1:10796396:10797265:-1 gene:ENSDARG00000093636 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 9 // 9 // 0 /// GENSCAN00000008914 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10796396:10797418:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 9 // 9 // 0 --- --- --- --- --- --- ENSDART00000131668 // Pfam // IPR005331 // Sulfotransferase --- main chr1(-):10796396-10797265
12953592 chr1 - 10807375 10812757 21 ENSDART00000134588 // LOC100536144 // carbohydrate sulfotransferase 12-like // --- // 100536144 /// ENSDART00000134588 // LOC797641 // carbohydrate sulfotransferase 12-like // --- // 797641 ENSDART00000134588 // ENSEMBL // cdna:novel chromosome:Zv9:1:10807375:10812757:-1 gene:ENSDARG00000095482 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 24 // 24 // 0 /// GENSCAN00000008921 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10807375:10808412:-1 transcript_biotype:protein_coding // chr1 // 100 // 43 // 9 // 9 // 0 --- --- --- --- --- --- ENSDART00000134588 // Pfam // IPR005331 // Sulfotransferase --- main chr1(-):10807375-10812757
12953595 chr1 - 10822605 10823555 15 ENSDART00000139755 // LOC797576 // carbohydrate sulfotransferase 12-like // --- // 797576 /// XM_001338014 // LOC797576 // carbohydrate sulfotransferase 12-like // --- // 797576 ENSDART00000139755 // ENSEMBL // cdna:novel chromosome:Zv9:1:10822605:10823555:-1 gene:ENSDARG00000094981 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 /// XM_001338014 // RefSeq // PREDICTED: Danio rerio carbohydrate sulfotransferase 12-like (LOC797576), mRNA. // chr1 // 100 // 93 // 14 // 14 // 0 /// GENSCAN00000008935 // ENSEMBL // cdna:genscan chromosome:Zv9:1:10822605:10823630:-1 transcript_biotype:protein_coding // chr1 // 100 // 100 // 15 // 15 // 0 --- --- --- --- --- --- ENSDART00000139755 // Pfam // IPR005331 // Sulfotransferase --- main chr1(-):10822605-10823555
12953597 chr1 - 10834058 10834541 5 --- --- --- --- --- --- --- --- --- --- --- chr1(-):10834058-10834541
12953599 chr1 - 10852002 10870648 18 ENSDART00000090689 // brat1 // BRCA1-associated ATM activator 1 // --- // 678547 /// NM_001040305 // brat1 // BRCA1-associated ATM activator 1 // --- // 678547 /// BC115289 // brat1 // BRCA1-associated ATM activator 1 // --- // 678547 ENSDART00000090689 // ENSEMBL // cdna:known chromosome:Zv9:1:10852002:10870648:-1 gene:ENSDARG00000062585 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 24 // 24 // 0 /// NM_001040305 // RefSeq // Danio rerio BRCA1-associated ATM activator 1 (brat1), mRNA. // chr1 // 100 // 100 // 22 // 22 // 0 /// BC115289 // GenBank // Danio rerio zgc:136845, mRNA (cDNA clone MGC:136845 IMAGE:7268110), complete cds. // chr1 // 100 // 100 // 22 // 22 // 0 BC115289 // Q1RLU1 --- ENSDART00000090689 // GO:0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// NM_001040305 // GO:0010212 // response to ionizing radiation // inferred from sequence or structural similarity /// BC115289 // GO:0010212 // response to ionizing radiation // inferred from sequence or structural similarity ENSDART00000090689 // GO:0005634 // nucleus // inferred from electronic annotation /// ENSDART00000090689 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// NM_001040305 // GO:0005634 // nucleus // inferred from electronic annotation /// NM_001040305 // GO:0005634 // nucleus // inferred from sequence or structural similarity /// BC115289 // GO:0005634 // nucleus // inferred from electronic annotation /// BC115289 // GO:0005634 // nucleus // inferred from sequence or structural similarity --- --- --- --- main chr1(-):10852002-10870648
12952582 chr1 - 1088740 1110311 18 NM_131603 // runx1 // runt-related transcription factor 1 // --- // 58126 /// AF391125 // runx1 // runt-related transcription factor 1 // --- // 58126 NM_131603 // RefSeq // Danio rerio runt-related transcription factor 1 (runx1), mRNA. // chr1 // 91 // 61 // 10 // 11 // 0 /// AF391125 // GenBank // Danio rerio Runx1 transcription factor (runx1) mRNA, complete cds. // chr1 // 91 // 61 // 10 // 11 // 0 /// ENSDART00000130697 // ENSEMBL // cdna:known chromosome:Zv9:1:1088740:1093175:-1 gene:ENSDARG00000087646 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 61 // 11 // 11 // 0 AF391125 // Q9DGB8 --- NM_131603 // GO:0001568 // blood vessel development // inferred from mutant phenotype /// NM_131603 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// NM_131603 // GO:0007399 // nervous system development // inferred from mutant phenotype /// NM_131603 // GO:0010628 // positive regulation of gene expression // inferred from genetic interaction /// NM_131603 // GO:0010628 // positive regulation of gene expression // inferred from mutant phenotype /// NM_131603 // GO:0030097 // hemopoiesis // inferred from mutant phenotype /// NM_131603 // GO:0030099 // myeloid cell differentiation // inferred from genetic interaction /// NM_131603 // GO:0030099 // myeloid cell differentiation // inferred from mutant phenotype /// NM_131603 // GO:0035162 // embryonic hemopoiesis // inferred from mutant phenotype /// NM_131603 // GO:0060216 // definitive hemopoiesis // inferred from mutant phenotype /// AF391125 // GO:0001568 // blood vessel development // inferred from mutant phenotype /// AF391125 // GO:0006355 // regulation of transcription, DNA-dependent // inferred from electronic annotation /// AF391125 // GO:0007399 // nervous system development // inferred from mutant phenotype /// AF391125 // GO:0010628 // positive regulation of gene expression // inferred from genetic interaction /// AF391125 // GO:0010628 // positive regulation of gene expression // inferred from mutant phenotype /// AF391125 // GO:0030097 // hemopoiesis // inferred from mutant phenotype /// AF391125 // GO:0030099 // myeloid cell differentiation // inferred from genetic interaction /// AF391125 // GO:0030099 // myeloid cell differentiation // inferred from mutant phenotype /// AF391125 // GO:0035162 // embryonic hemopoiesis // inferred from mutant phenotype /// AF391125 // GO:0060216 // definitive hemopoiesis // inferred from mutant phenotype NM_131603 // GO:0005634 // nucleus // inferred from electronic annotation /// AF391125 // GO:0005634 // nucleus // inferred from electronic annotation NM_131603 // GO:0003677 // DNA binding // inferred from electronic annotation /// NM_131603 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// NM_131603 // GO:0005524 // ATP binding // inferred from electronic annotation /// NM_131603 // GO:0043565 // sequence-specific DNA binding // inferred from physical interaction /// AF391125 // GO:0003677 // DNA binding // inferred from electronic annotation /// AF391125 // GO:0003700 // sequence-specific DNA binding transcription factor activity // inferred from electronic annotation /// AF391125 // GO:0005524 // ATP binding // inferred from electronic annotation /// AF391125 // GO:0043565 // sequence-specific DNA binding // inferred from physical interaction --- ENSDART00000130697 // Pfam // IPR013524 // Acute myeloid leukemia 1 (AML 1)/Runt --- main chr1(-):1088740-1110311
12953614 chr1 - 10957101 10958420 21 --- ENSDART00000054790 // ENSEMBL // cdna:known chromosome:Zv9:1:10957101:10958420:-1 gene:ENSDARG00000037621 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 23 // 23 // 0 --- --- --- --- --- --- ENSDART00000054790 // Pfam // IPR000276 // GPCR, rhodopsin-like, 7TM --- main chr1(-):10957101-10958420
12953616 chr1 - 10962667 11031476 22 ENSDART00000033361 // ttyh3b // tweety homolog 3b (Drosophila) // --- // 798421 /// ENSDART00000131116 // ttyh3b // tweety homolog 3b (Drosophila) // --- // 798421 /// NM_001037387 // ttyh3b // tweety homolog 3b (Drosophila) // --- // 798421 /// BC109434 // ttyh3b // tweety homolog 3b (Drosophila) // --- // 798421 ENSDART00000033361 // ENSEMBL // cdna:known chromosome:Zv9:1:10962667:11031476:-1 gene:ENSDARG00000007678 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 100 // 22 // 22 // 0 /// ENSDART00000131116 // ENSEMBL // cdna:known chromosome:Zv9:1:10962801:11030729:-1 gene:ENSDARG00000007678 gene_biotype:protein_coding transcript_biotype:protein_coding // chr1 // 100 // 82 // 18 // 18 // 0 /// NM_001037387 // RefSeq // Danio rerio tweety homolog 3b (Drosophila) (ttyh3b), mRNA. // chr1 // 81 // 73 // 13 // 16 // 0 /// BC109434 // GenBank // Danio rerio zgc:123242, mRNA (cDNA clone MGC:123242 IMAGE:7449139), complete cds. // chr1 // 81 // 73 // 13 // 16 // 0 BC109434 // Q32LT7 --- ENSDART00000033361 // GO:0006810 // transport // inferred from electronic annotation /// ENSDART00000033361 // GO:0006811 // ion transport // inferred from electronic annotation /// ENSDART00000033361 // GO:0006821 // chloride transport // inferred from electronic annotation /// ENSDART00000131116 // GO:0006810 // transport // inferred from electronic annotation /// ENSDART00000131116 // GO:0006811 // ion transport // inferred from electronic annotation /// ENSDART00000131116 // GO:0006821 // chloride transport // inferred from electronic annotation /// NM_001037387 // GO:0006810 // transport // inferred from electronic annotation /// NM_001037387 // GO:0006811 // ion transport // inferred from electronic annotation /// NM_001037387 // GO:0006821 // chloride transport // inferred from electronic annotation /// BC109434 // GO:0006810 // transport // inferred from electronic annotation /// BC109434 // GO:0006811 // ion transport // inferred from electronic annotation /// BC109434 // GO:0006821 // chloride transport // inferred from electronic annotation ENSDART00000033361 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSDART00000033361 // GO:0016020 // membrane // inferred from electronic annotation /// ENSDART00000033361 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSDART00000033361 // GO:0034707 // chloride channel complex // inferred from electronic annotation /// ENSDART00000131116 // GO:0005886 // plasma membrane // inferred from electronic annotation /// ENSDART00000131116 // GO:0016020 // membrane // inferred from electronic annotation /// ENSDART00000131116 // GO:0016021 // integral to membrane // inferred from electronic annotation /// ENSDART00000131116 // GO:0034707 // chloride channel complex // inferred from electronic annotation /// NM_001037387 // GO:0005886 // plasma membrane // inferred from electronic annotation /// NM_001037387 // GO:0016020 // membrane // inferred from electronic annotation /// NM_001037387 // GO:0016021 // integral to membrane // inferred from electronic annotation /// NM_001037387 // GO:0034707 // chloride channel complex // inferred from electronic annotation /// BC109434 // GO:0005886 // plasma membrane // inferred from electronic annotation /// BC109434 // GO:0016020 // membrane // inferred from electronic annotation /// BC109434 // GO:0016021 // integral to membrane // inferred from electronic annotation /// BC109434 // GO:0034707 // chloride channel complex // inferred from electronic annotation ENSDART00000033361 // GO:0005216 // ion channel activity // inferred from electronic annotation /// ENSDART00000033361 // GO:0005254 // chloride channel activity // inferred from electronic annotation /// ENSDART00000131116 // GO:0005216 // ion channel activity // inferred from electronic annotation /// ENSDART00000131116 // GO:0005254 // chloride channel activity // inferred from electronic annotation /// NM_001037387 // GO:0005216 // ion channel activity // inferred from electronic annotation /// NM_001037387 // GO:0005254 // chloride channel activity // inferred from electronic annotation /// BC109434 // GO:0005216 // ion channel activity // inferred from electronic annotation /// BC109434 // GO:0005254 // chloride channel activity // inferred from electronic annotation --- ENSDART00000033361 // Pfam // IPR006990 // Tweety /// ENSDART00000131116 // Pfam // IPR006990 // Tweety --- main chr1(-):10962667-11031476

Total number of rows: 75212

Table truncated, full table size 62270 Kbytes.




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