GEO DataSets

(Submitter supplied) CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: Jun 28, 2007) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. more...

Organism:

Mus musculus

2 DataSets

16 Series

1 Related Platform

295 Samples

Download data: TAR

(Submitter supplied) This is identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

1 DataSet

2 Series

1 Related Platform

36 Samples

Download data: CDF

(Submitter supplied) Custom CDF (Brainarray Entrez Gene v12.0.0) Protocol: see manufacturer's web site

Organism:

Mus musculus

1 DataSet

7 Series

1 Related Platform

87 Samples

Download data: CDF

(Submitter supplied) Custom CDF (Brainarray v11.0.1); Entrez Gene Protocol: GPL1261 using Entrez Gene custom CDF available from: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/11.0.1/entrezg.download/mouse4302mmentrezgcdf_11.0.1.tar.gz

Organism:

Mus musculus

6 Series

1 Related Platform

53 Samples

Download data: CDF

(Submitter supplied) CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. After probe sequences are BLASTed against the latest UniGene Build and genome sequence, a series of filtering and grouping criteria are applied for different CDF files. A probe must hit only one genomic location. Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon; Protocol: This is identical to GPL1261 but a custom cdf environment was used to extract data. more...

Organism:

Mus musculus

2 Series

1 Related Platform

13 Samples

Download data: TAR

(Submitter supplied) CDF file was created by Microarray Lab at the Molecular and Behavioral Neuroscience Institute at the University of Michigan. Oligonucleotide probes on GeneChips were reorganized based on the latest genome and transcriptome information. In this particular case the Entrez Gene database (build: 05/04/2006) was used as source. For the CDF file based on Entrez Gene: A probe must hit only one genomic location; Probes that can be mapped to the same target sequence in the correct direction are grouped together in the same probe set; Each probe set must contain at least three oligonucleotide probes and probes in a set are ordered according to their location in the corresponding exon. more...

Organism:

Mus musculus

1 DataSet

1 Series

1 Related Platform

24 Samples

Download data: R, RD, RDA, TXT

(Submitter supplied) This identical to GPL1261 but a custom CDF environment was used to extract data. The custom CDF(Mm430_Mm_REFSEQ_8) was described by Dai et al., NAR 2005 33(20), PMID: 16284200. The cdf can be found at the link below. Protocol: see manufacturer's web site

Organism:

Mus musculus

1 DataSet

5 Series

1 Related Platform

49 Samples

Download data: TAR

(Submitter supplied) http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/24.0.0/entrezg.asp Protocol: This is identical to GPL1261 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

2 Series

1 Related Platform

45 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL1261 but a custom CDF environment was used to extract data. Affymetrix probes were summarized and re-annotated with Ensembl gene names from the Ensembl July 2015 archive (Ensembl version 81). Protocol: See manufacturer's website.

Organism:

Mus musculus

1 Series

1 Related Platform

24 Samples

Download data

(Submitter supplied) This is identical to GPL1261 but a custom CDF environment was used to extract data. [Brainarray Version 21, Mouse4302_Mm_ENTREZG_21.0.0].

Organism:

Mus musculus

4 Series

1 Related Platform

94 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL1261 but a custom cdf environment was used to extract data. We used custom chip definition files (CDF) based on Ensembl gene annotation v19.

Organism:

Mus musculus

1 Series

1 Related Platform

8 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL1261 but a custom CDF environment was used to extract data [Brainarray Version 17, Mouse4302_Mm_ENSG_17.0.0].

Organism:

Mus musculus

2 Series

1 Related Platform

24 Samples

Download data: CDF, TXT

(Submitter supplied) This is identical to GPL1261 but a custom CDF environment was used to extract data [Brainarray Version 18, Mouse4302_Mm_ENTREZG_18.0.0].

Organism:

Mus musculus

5 Series

1 Related Platform

344 Samples

Download data: CDF, TXT

(Submitter supplied) This identical to GPL1261 but a custom CDF environment was used to extract data. The .cdf and mapping files are provided as supplementary files. Protocol: see manufacturer's web site

Organism:

Mus musculus

1 Series

1 Related Platform

18 Samples

Download data: CDF, TXT

(Submitter supplied) http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/17.0.0/entrezg.asp Protocol: This is identical to GPL1261 but a custom cdf environment was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

5 Series

1 Related Platform

198 Samples

Download data: CDF, TXT

(Submitter supplied) Dai et al., NAR (2005), 33(20):e175 and de Leeuw et al.,BMC Res Notes. 2008; 1: 66

Organism:

Mus musculus

1 Series

1 Related Platform

97 Samples

Download data: CDF

(Submitter supplied) Based on Mouse430A2_Mm_ENST_13.0.0 CDF available from Brainarray: http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/13.0.0/enst.asp Protocol: see manufacturer's website

Organism:

Mus musculus

1 Series

1 Related Platform

12 Samples

Download data

(Submitter supplied) http://brainarray.mbni.med.umich.edu/Brainarray/Database/CustomCDF/12.1.0/entrezg.asp Protocol: This is identical to GPL1261 but a custom cdf environmnet was used to extract data. The cdf can be found at the link below.

Organism:

Mus musculus

3 Series

1 Related Platform

36 Samples

Download data: CDF, TXT

(Submitter supplied) Alternative CDF's were generated by masking probes which showed non-specific hybridization towards mouse in the human arrays and vice versa. Briefly, using raw intensity signals from cel files, individual probes were filtered if they met the following criteria: the net intensity (PM-MM) of each probe pair from the cross-reactive species was less than 10 and greater than 50% of the corresponding signal from human tumor core. more...

Organism:

Mus musculus

1 Series

1 Related Platform

16 Samples

Download data: CDF

(Submitter supplied) This is identical to GPL1261 but a custom CDF environment was used to extract data [Brainarray Version 17, Mouse4302_Mm_ENTREZG_17.1.0].

Organism:

Mus musculus

3 Series

1 Related Platform

22 Samples

Download data: CDF, TXT