| ID: 619223 | voltage-sensor containing phosphatase [Ciona intestinalis (vase tunicate)] | Chromosome 2, NC_020167.2 (3291294..3296342, complement) | |
| ID: 778911 | transcription factor protein [Ciona intestinalis (vase tunicate)] | NW_004190723.1 (6264..8022) | bra |
| ID: 100187685 | microRNA mir-200 [Ciona intestinalis (vase tunicate)] | NW_004190646.1 (8331..8416) | cin-mir-200, mirn200 |
| ID: 445699 | paired superclass homeobox transcription factor [Ciona intestinalis (vase tunicate)] | NW_004190397.2 (197661..213473) | Ci-Pitx, PITX1 |
| ID: 778966 | transcription factor protein [Ciona intestinalis (vase tunicate)] | Chromosome 11, NC_020176.2 (4395585..4404758, complement) | Ci-FoxA-a, Ci-fkh, FOXA1, fkh |
| ID: 778979 | transforming growth factor beta superfamily signaling ligand [Ciona intestinalis (vase tunicate)] | NW_004190345.2 (32119..37584) | |
| ID: 445677 | msxb homeoprotein [Ciona intestinalis (vase tunicate)] | Chromosome 2, NC_020167.2 (5773526..5775829) | Ci-msxb |
| ID: 445718 | homeobox transcription factor Hox1 [Ciona intestinalis (vase tunicate)] | NW_004190417.1 (182359..188436, complement) | Ci-Hox1 |
| ID: 445682 | distal-less [Ciona intestinalis (vase tunicate)] | Chromosome 7, NC_020172.2 (627843..629430, complement) | Ci-Dll-B, DLX3 |
| ID: 723806 | Notch [Ciona intestinalis (vase tunicate)] | Chromosome 9, NC_020174.2 (4753230..4786088) | |
| ID: 445650 | fibroblast growth factor 8/17/18 [Ciona intestinalis (vase tunicate)] | Chromosome 5, NC_020170.2 (2812422..2824624, complement) | Fgf18 |
| ID: 445693 | Prx1 protein [Ciona intestinalis (vase tunicate)] | Chromosome 12, NC_020177.2 (1334402..1340968) | Ci-Rx, Rax |
| ID: 445777 | GATAa protein [Ciona intestinalis (vase tunicate)] | NW_004190423.2 (318047..328839, complement) | Ci-GATA-a |
| ID: 445669 | Otx [Ciona intestinalis (vase tunicate)] | Chromosome 4, NC_020169.2 (4308890..4314145, complement) | |
| ID: 619235 | hemocyanin-like protein 2 [Ciona intestinalis (vase tunicate)] | | po-2 |
| ID: 445806 | beta-catenin [Ciona intestinalis (vase tunicate)] | Chromosome 9, NC_020174.2 (3811..11971, complement) | CTNNB1 |
| ID: 100145818 | huntingtin [Ciona intestinalis (vase tunicate)] | Chromosome 5, NC_020170.2 (2849504..2872565, complement) | |
| ID: 100169888 | homeobox transcription factor Hox13 [Ciona intestinalis (vase tunicate)] | Chromosome 7, NC_020172.2 (2695865..2702874, complement) | Ci-Hox13, hox12/13 |
| ID: 445719 | hox10 protein [Ciona intestinalis (vase tunicate)] | NW_004190374.1 (98496..102901, complement) | Ci-Hox10, Hoxc10 |
| ID: 778924 | MyoD-family protein j [Ciona intestinalis (vase tunicate)] | Chromosome 14, NC_020179.2 (4306195..4312410, complement) | cimdfa, cimdfb |